G263566


Basic Information

Item Value
gene id G263566
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 4498199 ~ 4499244 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU312320
TCTCTTTAGCCAAAAATATTCATGACGTGACATGAATTTCATTATATGATATCATATGACCAAATTTTTGTATGCAGTGTTGcagcttgtgtgtttgttgtttttctctgtgaCATTCAAAAATGTCAAGACATTATAAAGggttaaaacaaacacacatgcaaagaagATTCTGTGAACATGCAAATATGTGTTTTGAAAGGATCATTAGCGGGCGTATGTGAAAGCACCTGGGAGAGATGATAAAACTCTCAATACCTACTGCCTCTTATTGCAGCCTGTGTTGTTCTGCCTCTTTTGAGAATTTCTAGACCATTATAATGGAAGGGATACTTTtgcagagaaacaaaaaaaacacgtaAAGCTGTCTTACACGGAGTGTGAGCGTTGCTACGGCGCAGGTcaaaaatccaccaataggaggacggcgtTAGATGAGGCAAAACTCACAAGATAGCTACAAATCCAGTAGCTGTGAtgacaaaacataaacaaagcattctaacagaaaaaaatatccttcattgttttctttaatcgcagatCTGTCGTTAGTGGAGCATCATTTTATAACCTGAATCTGTTATATcgcagtctgttatagaatttgaCTAAGATTTTATTGGTATCATTTCATACAgtgtaataagtaataattatGAAAGAATGCTGAAATCTCACAGTGTAAAACCAGCTCAAGAAAACAGCTTATTGACTATTTTGGGAAAAGTTTGCTATTTTGCTGACTAGCTTGCAATTTAATATTAGCCTGTTAAAtacaatgtaaatatatttttctttctttgttatgaGATGGTCGAAGCTTCTTTTTTCATGCTTACGATAAACACCACCACCTAAAGGCATCTGACTGTAATGTACAATGCGTAGGATTTTTGTTTGCACTATATTGTGCATTTCTGCAAAGTGATTAATCTAATTTAGATTCCACGTTTTGAGGGCTTTGACCTTGTTGTTACAGAGGTGCTAGTTTCAGATTCAGATGTTAATCATGTACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU312320 True 1020 lncRNA 0.35 2 4498199 4499244

Neighbor

gene id symbol gene type direction distance location
pdlim5b LOC108277016,LOC108435134 coding upstream 4407 4432696 ~ 4493792 (+)
opn4xa LOC108276607,LOC108435125 coding upstream 72081 4415574 ~ 4426118 (+)
LOC113544945 wdr70 coding upstream 140051 4319943 ~ 4358148 (+)
cplane1 c16h5orf42 coding upstream 179854 4294368 ~ 4318345 (+)
nup155 nup155,LOC107692018 coding upstream 215352 4269470 ~ 4282847 (+)
glis3 LOC108277006 coding downstream 342837 4842081 ~ 4864137 (+)
rfx3 rfx3,LOC107710408 coding downstream 366324 4865568 ~ 4883273 (+)
LOC113544783 LOC108277320 coding downstream 495462 4994706 ~ 5016446 (+)
sgsm1b sgsm1b,LOC108276524,LOC108435151 coding downstream 559431 5058675 ~ 5074781 (+)
gal3st1b LOC108277024 coding downstream 590432 5089676 ~ 5101509 (+)
G263439 NA non-coding upstream 211993 4285977 ~ 4286206 (+)
G263025 NA non-coding upstream 311945 4185759 ~ 4186254 (+)
G262946 NA non-coding upstream 705692 3790141 ~ 3792507 (+)
G262894 NA non-coding upstream 798622 3695051 ~ 3699577 (+)
G262872 NA non-coding upstream 830756 3665524 ~ 3667443 (+)
G263612 NA non-coding downstream 118822 4618066 ~ 4621490 (+)
G263634 NA non-coding downstream 222302 4721546 ~ 4775709 (+)
G263724 NA non-coding downstream 377001 4876245 ~ 4876505 (+)
G263715 NA non-coding downstream 384083 4883327 ~ 4884727 (+)
G263716 NA non-coding downstream 386102 4885346 ~ 4886801 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 922062 3253316 ~ 3576137 (+)
nrip1b LOC108277259 other upstream 1356446 3116169 ~ 3141753 (+)
pcp4a NA other upstream 1680936 2795491 ~ 2817263 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other upstream 1750882 2744396 ~ 2747317 (+)
ponzr2 LOC108277330 other upstream 3078710 1411986 ~ 1419489 (+)
triap1 triap1,LOC106568193 other downstream 578609 5077853 ~ 5080643 (+)
G264336 NA other downstream 1509556 6008800 ~ 6011902 (+)
LOC113544903 mphosph9 other downstream 1670649 6169893 ~ 6194681 (+)
G264948 NA other downstream 2567627 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 2616807 7116051 ~ 7126246 (+)

Expression


Co-expression Network