G263612


Basic Information

Item Value
gene id G263612
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 4618066 ~ 4621490 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU312366
GGGGAGAAGAGCCTAGACTGTTTTAACGTTAGtgtaacttgtttcgtggatgtttcATGGAccaaaaatggataaaagaacGACATGTAGTTTTTTAACCAGTTAAACATTGTTAGCATTTACAAAttgttgtgtaaaataaataaaacaaacaacaatagTTATTATTCGTCGTACTTTTTGCTAGCTATTGAGCTGGCTGCTAGCTGGCGGGAAAGGCTGGTATAACCTTGTTgctatgttaaatattaaacagagaTCCAGAACACAGACAACTAAACGAGAAAGCTGAACCGAGGCGTCTTTCCCAGAACTTGCAGCCTGAGCTGCGTTCTCACAGCACTGCACTCTCTGCCGAATCAGCAGAACGGCTCTAACCAACTTTTCTTTGTCTGTGCATGTCTGTTTTGTCCTTCCCAGTCTATTATTCTTATCACTTACGATTAAATTGTGTCTATGAAGGCGtacaaaaatgtcagaaaatgaTACACAAAAGTTTATGAGTTCTGATTCAATCAAAGTGGAGTAGCACAGGCCTGGCATATCTGTTACGGgcaaaaatatggaaatgtgCAGCAAATCAATgtgcataaatattaatacCGCGGAATGTTCCAGAGCACACGGTATTATTTGTGCGATGGATATCTATGCCGTGACACAGAATGAGTTAGCAGTGACCTTGCCAGGCTGAGAGAAACTGATCAAACTGCCGAGATTTTacacagaggaaaaagaaaaagagagagatgggttTAGAGAAGGCTTTTAATGATAATATCCCAAAACTGCAAGATTTACAGGAACCAGAACGCTAATACATCTTTGCCTTATTCATGACTCACATCTGAGAAATCCTCCATCTGTAATACACCTTCcccttctgttttatttatttacctccTAACTGTACACATAAATTATCCATGTCTTGATTAATGGAGTTTACTACAGAGCTTAAAAGAagacaaaagtatttgaatatgaatggtatatatttgaattatatacatatggagtgagcagcagctctgtgagccttgttgaagagagaggtcagagaagaaccCAAACTGGTTTGAtgtgacaggaagtctatggtaactcaGGGTAAATAGTCAAATAATTCAGTAatcctgtgtccactgtagcctctgaTTCCCGTTCTTAGCTAACAGAAGAGGAACCCGATGTGgccttctgctcttgtagcctatccacctcaACGTTTGAAATATTgcgcattctgagatgctttcctgctcaccatggttgtaaacaGTGgaatttgagttaccatagccttcctgtcagctcgaacctgtctggccattctcctctgacctctctcatcaactctcatacccacagaactgccgctcactgaatgttttttgttttttgcactgttCTGCGTGAAAGCTAGAGactgtttgtgtgaaaatcccaggagataagcagtgtctgaaatacccaaaccagccggtctggcaccaacaatcatccAAGGCCAAGGTCACTGCAGATCCATGGCCACTGCAGTTTAAATCAAAcTATACCATGTGGAGCAGCTTCATTTTCACCAAGGTTTCTGCACTACCATAAAACAAAGAGAGTTCACAATTCCATCCTACCATGCTAAACTCAAACAGAACCAACACCAGCTTCCTTATACTTATCCATAATGCAGAAACAGCACCTGGGCCATCTGTCCATTGAGCTGTATGTTGGTCACAACAGTGTGTGATGCCCTCAGGTCCAGCATAGTGAACTCACACTTTCTTCTCACAGTCTTTACACCTCTGAAGTGCACCCCTTTGCATTTTACACCTTCTTCCCTTATTTAAGCCTAGCCTGGGCCAAGAACAACTCCCACTCACAGTACAGTATACACCACACAGGATTGAAAAGCTCGATGAACTGCAGCGAGTGTGGGGAATTCTCTGTCACAACTCGAGTCATTTACAAACGATGGACCCTCGACTGATTCAGCAGACTGCAGGTTTCGTTGAGGGGGGTTCATTTTGGTAGTTGCAGCCTCATTAATATTGCAAATGTTTTTACAATGAACACActatttcagcaaaaaaaagatTCCCTGTGGACCTGCACTGCAGCGAACCTCGACCAAACAAAACGGCAGATAACAAGATAAATGAGCGCTAAAGAGTCCTAATTGAACAACAGCATTAAATAACATTAAGCACACCGTTGTCTATTTCATTATAATAAAGCTGAAGTGTGTTGGAGCTCAATCCCTTGTGCCCTTTCCTTGCTTGTTCATTCTggatgctagctagcaaaaaatACATATACTCCTCTACACACTCTTATCACTGGGGCTGGTAATAATTTACTGTCAACCACAGcagtgtataaacacactgCCAGTGTAGTCCTCCTTCATTCATTGTCATTCCTTTAAAAATTCTTGAATGTTATCATTGATACGTTTAATGTTATgatggcctgtttttttttttttcccagtcatCAAATGTCCAGTTTGgttgagtctgtgcccactgtagcctcagattcctgttattggctgacaggaggggaccctgatgtggtcttttgctgttgtagcccaaggtttgatgtgttggatgcttttctgctcaccacggttgtaaagagtggttatttgtgcTACTGTACACTtgctgtcagctcaaaccaatctgtcttctccactgacctctctcatccCACAGAACTGATGCTTACTGGATGTTTGAGGCACTGACATCAAATTttctttccccattctgatgtttcatgtgtACATTAacaagttcttgacctgtatctggatTATTTTAAGCACTGTGCTGAAAACCGCATGAATGTAAaagtgtacaggtattcctaataaagtggacagttaGTGTATAACATAATATTCAGTATGTGTtcaatgtatttatatatctaaGCAAATAGTATAGCACCCCTTAAAGAACAGAACTAGTGACTTTATTAGCTCCCCAGGTTTGCTAGCACACTAGCTAATGATAGGCTAGCTTTAATATTGTGCCTCAAAGCAAAACTGACTATTATATCATATACAGGTTCCCtagtaagctagctaacattaggttAACTATTAGGCTGTGTACTAGTTAGAAAGCTAGCTAACCTTAGGCTATTATATTGTGTACACGTacattagcaagctagctaacattaggctaagTCTTATATTGAACAAACCAGTAGACAGGTTccctagttagctagctaacat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU312366 True 3253 lncRNA 0.41 3 4618066 4621490

Neighbor

gene id symbol gene type direction distance location
bmpr1bb bmpr1b,LOC108435137 coding upstream 49703 4496472 ~ 4568363 (+)
pdlim5b LOC108277016,LOC108435134 coding upstream 124274 4432696 ~ 4493792 (+)
opn4xa LOC108276607,LOC108435125 coding upstream 191948 4415574 ~ 4426118 (+)
LOC113544945 wdr70 coding upstream 259918 4319943 ~ 4358148 (+)
cplane1 c16h5orf42 coding upstream 299721 4294368 ~ 4318345 (+)
glis3 LOC108277006 coding downstream 220591 4842081 ~ 4864137 (+)
rfx3 rfx3,LOC107710408 coding downstream 244078 4865568 ~ 4883273 (+)
LOC113544783 LOC108277320 coding downstream 373216 4994706 ~ 5016446 (+)
sgsm1b sgsm1b,LOC108276524,LOC108435151 coding downstream 437185 5058675 ~ 5074781 (+)
gal3st1b LOC108277024 coding downstream 468186 5089676 ~ 5101509 (+)
G263566 NA non-coding upstream 118822 4498199 ~ 4499244 (+)
G263439 NA non-coding upstream 331860 4285977 ~ 4286206 (+)
G263025 NA non-coding upstream 431812 4185759 ~ 4186254 (+)
G262946 NA non-coding upstream 825559 3790141 ~ 3792507 (+)
G262894 NA non-coding upstream 918489 3695051 ~ 3699577 (+)
G263634 NA non-coding downstream 100056 4721546 ~ 4775709 (+)
G263724 NA non-coding downstream 254755 4876245 ~ 4876505 (+)
G263715 NA non-coding downstream 261837 4883327 ~ 4884727 (+)
G263716 NA non-coding downstream 263856 4885346 ~ 4886801 (+)
G263801 NA non-coding downstream 401785 5023275 ~ 5025508 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 1041929 3253316 ~ 3576137 (+)
nrip1b LOC108277259 other upstream 1476313 3116169 ~ 3141753 (+)
pcp4a NA other upstream 1800803 2795491 ~ 2817263 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other upstream 1870749 2744396 ~ 2747317 (+)
ponzr2 LOC108277330 other upstream 3198577 1411986 ~ 1419489 (+)
triap1 triap1,LOC106568193 other downstream 456363 5077853 ~ 5080643 (+)
G264336 NA other downstream 1387310 6008800 ~ 6011902 (+)
LOC113544903 mphosph9 other downstream 1548403 6169893 ~ 6194681 (+)
G264948 NA other downstream 2445381 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 2494561 7116051 ~ 7126246 (+)

Expression


Co-expression Network