G263716


Basic Information

Item Value
gene id G263716
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 4885346 ~ 4886801 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU312488
AATGATAGATCAACGATATCTTAATTAAATTCTGCCagaatacacttttctgagatctCCCAGGTTCTTGATaatctttaacattttaaacattattttattttaggacACAAAATCTCTTACTGATCACTTGATTCTTAATTTatcctccttttcagtgttaaataacttATTTTTGAAGACCGTAAAGTCCAGCAAACTTCtataaaataatgcatattGTGTACCATAGAAATGTCCTGTGAAAAAGTATTCACAACACATTTCTGTGGTACAAGTATAAAAGTATAGTGATATTTTTGTCCACCCCTGACTACTTTGACATGATTTGACAAGCTTGGTATGCTGCTTGGGAAGTAGCCGAACTCTGACTCTGCActctactgtactaaacagtgcatttttaatttttttttcctccctgaaTGTTGAATTACTGTTGGACATACGACACGCTGTTTAGCGCCATAGCGTGTGGTTTTTGGACAGAGCCGACCCTAACTGATGCGAGGTGTGCATCACTTAAAGGCTGTGAAGAACACATGACTTAAACATATCAAACCCCCTGAGCTGGAGTGAACAGGAAAAGGCTCTTCTAGTTCTAGCAAGGCAGCTTCACTGTTAAAGAGACTTCAGTGCCTTCAATTTCACTAAGACCTCCAGGAGCAGACAAAATGTTTGCTCACTTCTGCAATTATTATAACTTTAAGAGCAGAACAGTCGAGTTTAAGCTGCATGCTCAAAACAAGGTCTACTCTTACACGTGGTTCAGGTGTCCCTACTGTCCAACATCCCTCACCatcaactcacacacaccaaccacAGATATGCACACGCACATTTAGAGGCACATCCATGACTTCATCTCGCCATTGTGACTGATAACTGTATTAATCTCTTAAAATGGGAAACGTAGAACTCTTGGGAGTCTACCAATATGACCGCTGCACTATCCCAGTCATCATAacgtttctttttctttcctctttctatTATTTGTAGCGTGATtgtgattgtttttaatttctttatgcTTTGGGAATATTTTAAGTGCCATTTGACAGTTTACGTAGTGCGCCGTGGCCTGCTGTAGCGCGTTCTAATGCAAGCACAAGCATTGTGGTACTCCCGAGCGACTCTGCTCGGAAAAGCAGTCTTAGTTGTAAATATTGAGCTAAAACGGatggttatttatttactcgCCCTTTCTTTAACCACTAAAGTGTACATTGTGATTCTTTTCTGCCCGCTTTCTCTTTTTGGACAATGTATTGTactttacatatacatacaatttgtattttttttgttcttttttgtgtgttgttcCAATTTCTCTTAGTAAATTATATTCTCTGAAAAATTGGTAAGAGCTAACCAATATGTGTAGAGTGatttgtattgtgtattttaCATGAAGGATGACAAAACTGGGgaacttttatatttataaagg

Function

GO:

id name namespace
GO:0031514 motile cilium cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU312488 True 1456 lncRNA 0.37 1 4885346 4886801

Neighbor

gene id symbol gene type direction distance location
rfx3 rfx3,LOC107710408 coding upstream 2073 4865568 ~ 4883273 (+)
glis3 LOC108277006 coding upstream 21209 4842081 ~ 4864137 (+)
bmpr1bb bmpr1b,LOC108435137 coding upstream 316983 4496472 ~ 4568363 (+)
pdlim5b LOC108277016,LOC108435134 coding upstream 391554 4432696 ~ 4493792 (+)
opn4xa LOC108276607,LOC108435125 coding upstream 459228 4415574 ~ 4426118 (+)
LOC113544783 LOC108277320 coding downstream 107905 4994706 ~ 5016446 (+)
sgsm1b sgsm1b,LOC108276524,LOC108435151 coding downstream 171874 5058675 ~ 5074781 (+)
gal3st1b LOC108277024 coding downstream 202875 5089676 ~ 5101509 (+)
apc apc,LOC107727753,LOC107568587,LOC107692017,LOC107549007,LOC107653779 coding downstream 284550 5171351 ~ 5204423 (+)
LOC113544876 LOC108277390 coding downstream 319116 5205917 ~ 5208655 (+)
G263715 NA non-coding upstream 619 4883327 ~ 4884727 (+)
G263724 NA non-coding upstream 8841 4876245 ~ 4876505 (+)
G263634 NA non-coding upstream 109637 4721546 ~ 4775709 (+)
G263612 NA non-coding upstream 263856 4618066 ~ 4621490 (+)
G263566 NA non-coding upstream 386102 4498199 ~ 4499244 (+)
G263801 NA non-coding downstream 136474 5023275 ~ 5025508 (+)
G263953 NA non-coding downstream 318194 5204995 ~ 5205419 (+)
G263993 NA non-coding downstream 686163 5572964 ~ 5573280 (+)
G264009 LOC108277354 non-coding downstream 780781 5667582 ~ 5726945 (+)
G264002 NA non-coding downstream 816042 5702843 ~ 5704831 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 1309209 3253316 ~ 3576137 (+)
nrip1b LOC108277259 other upstream 1743593 3116169 ~ 3141753 (+)
pcp4a NA other upstream 2068083 2795491 ~ 2817263 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other upstream 2138029 2744396 ~ 2747317 (+)
ponzr2 LOC108277330 other upstream 3465857 1411986 ~ 1419489 (+)
triap1 triap1,LOC106568193 other downstream 191052 5077853 ~ 5080643 (+)
G264336 NA other downstream 1121999 6008800 ~ 6011902 (+)
LOC113544903 mphosph9 other downstream 1283092 6169893 ~ 6194681 (+)
G264948 NA other downstream 2180070 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 2229250 7116051 ~ 7126246 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G388304 NA non-coding CI01000203 null 480650 ~ 485068 (+)
mexican tetra (Astyanax mexicanus) G173054 NA non-coding NC_035916.1 CM008319.1 3192896 ~ 3197504 (-)