G263993


Basic Information

Item Value
gene id G263993
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 5572964 ~ 5573280 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU312815
gatcagggtaaatttaacttattttgtcttctgggaaacatgtaactatcttctgtagcctctgaagagcagtactaaatgaaaaaatatgatatttaggcaaaataagaaaaatgtacacatctccattctgttcaaaagttttcaccccccggctcttaatgcatggtttttccttctggagcatcagtgagcgtttgaaccttctgtaatagttgcatacgagtccctcagttgttggaaagggttcacatacacaaaaaatgctggaaaa

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0000151 ubiquitin ligase complex cellular_component

KEGG:

id description
ko03040 Spliceosome
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU312815 True 274 lncRNA 0.37 2 5572964 5573280

Neighbor

gene id symbol gene type direction distance location
cntnap3 LOC108276565,LOC108410547 coding upstream 55218 5390684 ~ 5517746 (+)
LOC113544876 LOC108277390 coding upstream 364309 5205917 ~ 5208655 (+)
apc apc,LOC107727753,LOC107568587,LOC107692017,LOC107549007,LOC107653779 coding upstream 368541 5171351 ~ 5204423 (+)
gal3st1b LOC108277024 coding upstream 471455 5089676 ~ 5101509 (+)
sgsm1b sgsm1b,LOC108276524,LOC108435151 coding upstream 498183 5058675 ~ 5074781 (+)
zmp:0000001301 LOC108277205,LOC108441065 coding downstream 36902 5610182 ~ 5626256 (+)
LOC113544883 spin1,LOC107740044,LOC107568611,LOC107549006 coding downstream 54150 5627430 ~ 5639581 (+)
nxnl2 nxnl2,LOC107687376 coding downstream 72591 5645871 ~ 5649454 (+)
wu:fb59d01 NA coding downstream 79439 5652719 ~ 5660142 (+)
LOC113544765 LOC108277051,LOC108441067,LOC105015094,LOC106563243 coding downstream 90804 5664084 ~ 5701178 (+)
G263953 NA non-coding upstream 367545 5204995 ~ 5205419 (+)
G263801 NA non-coding upstream 547456 5023275 ~ 5025508 (+)
G263716 NA non-coding upstream 686163 4885346 ~ 4886801 (+)
G263715 NA non-coding upstream 688237 4883327 ~ 4884727 (+)
G263724 NA non-coding upstream 696459 4876245 ~ 4876505 (+)
G264009 LOC108277354 non-coding downstream 94302 5667582 ~ 5726945 (+)
G264002 NA non-coding downstream 129563 5702843 ~ 5704831 (+)
G264056 NA non-coding downstream 349030 5922310 ~ 5926306 (+)
G264424 NA non-coding downstream 601034 6174314 ~ 6174692 (+)
G264426 NA non-coding downstream 621648 6194928 ~ 6195142 (+)
triap1 triap1,LOC106568193 other upstream 492321 5077853 ~ 5080643 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 1996827 3253316 ~ 3576137 (+)
nrip1b LOC108277259 other upstream 2431211 3116169 ~ 3141753 (+)
pcp4a NA other upstream 2755701 2795491 ~ 2817263 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other upstream 2825647 2744396 ~ 2747317 (+)
G264336 NA other downstream 435520 6008800 ~ 6011902 (+)
LOC113544903 mphosph9 other downstream 596613 6169893 ~ 6194681 (+)
G264948 NA other downstream 1493591 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 1542771 7116051 ~ 7126246 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 2602234 8175514 ~ 8187611 (+)

Expression


Co-expression Network