G264428


Basic Information

Item Value
gene id G264428
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 6218509 ~ 6283930 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU313354
GTAAACATGGAAAACTGATTAGAATGCCTATCGTTCTTGCTGAAGTTAATTTTAGCTCCAGCTACCCCctcctacatacacacacacacacacacacaccgatgtTATAAACGTGTACCAGCCATCTGCTGTGGCCTGTGCGACATGGCAGGGCAGAGCTTGCCTAATGGCCGAGGGTAGGCCGGGCACCCAGCgtggcacacagacacactggcAGATTGACCCTGTCGGTGTAGCATTAAATGCCCTCtctggcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcgtgagATTTGGCTTTTCGTTCTTCCTGATGGTGTTACAGCGTGAATATGTCTTATGAGCTCTGCGCCATGAGTCAGAACAGTTGTCAGGAGGCACAGGCAGATTTTtcgagctttttttttttttcttttttttttttttcttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU313354 True 438 lncRNA 0.47 2 6218509 6283930

Neighbor

gene id symbol gene type direction distance location
LOC113544858 cdk2ap1,LOC108425184,LOC105026112,LOC103046776,LOC102226456,LOC107722329 coding upstream 49545 6165896 ~ 6168964 (+)
sbno1 sbno1 coding upstream 53557 6148993 ~ 6164952 (+)
rilpl1 rilpl1,LOC108410543,LOC106562515,LOC107655265,LOC107704174 coding upstream 88867 6116153 ~ 6129642 (+)
LOC113544842 LOC108276719,LOC108410541,LOC107722326 coding upstream 103117 6099069 ~ 6115392 (+)
ccdc62 ccdc62 coding upstream 119569 6090772 ~ 6098940 (+)
elovl7b LOC108277391,LOC108425137,LOC107588931,LOC107706775,LOC107704168,LOC106571348 coding downstream 160324 6444254 ~ 6447190 (+)
depdc1b depdc1b,LOC107654254,LOC107704111,LOC107709206,LOC107602227 coding downstream 163529 6447459 ~ 6458962 (+)
LOC113544721 pde4d,LOC108276982,LOC108425192,LOC107704165,LOC107709115,LOC107653658,LOC108443004,LOC102789696 coding downstream 186020 6469950 ~ 6651852 (+)
LOC113544738 LOC108277217,LOC108425195 coding downstream 403537 6687467 ~ 6695669 (+)
plk2a LOC108277216,LOC108425197,LOC107653495,LOC107602251,LOC107709193,LOC107588929,LOC107706772 coding downstream 413744 6697674 ~ 6701821 (+)
G264427 NA non-coding upstream 9498 6207990 ~ 6209011 (+)
G264426 NA non-coding upstream 23367 6194928 ~ 6195142 (+)
G264424 NA non-coding upstream 43817 6174314 ~ 6174692 (+)
G264056 NA non-coding upstream 292203 5922310 ~ 5926306 (+)
G264009 LOC108277354 non-coding upstream 491564 5667582 ~ 5726945 (+)
G264475 NA non-coding downstream 97736 6381666 ~ 6452851 (+)
LOC117599393 NA non-coding downstream 155967 6439897 ~ 6441877 (+)
G264835 NA non-coding downstream 417907 6701837 ~ 6702362 (+)
G264903 NA non-coding downstream 647948 6931878 ~ 6947742 (+)
G264894 NA non-coding downstream 678655 6962585 ~ 6962918 (+)
LOC113544903 mphosph9 other upstream 23828 6169893 ~ 6194681 (+)
G264336 NA other upstream 206607 6008800 ~ 6011902 (+)
triap1 triap1,LOC106568193 other upstream 1137866 5077853 ~ 5080643 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 2642372 3253316 ~ 3576137 (+)
nrip1b LOC108277259 other upstream 3076756 3116169 ~ 3141753 (+)
G264948 NA other downstream 782941 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 832121 7116051 ~ 7126246 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 1891584 8175514 ~ 8187611 (+)
LOC113544929 NA other downstream 2045775 8329705 ~ 8353841 (+)
G265696 NA other downstream 2349705 8633635 ~ 8639728 (+)

Expression


Co-expression Network