G264944


Basic Information

Item Value
gene id G264944
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7089667 ~ 7090962 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU313921
ttataGACAAACTGATAAACGGTTAATTGCATTGATAGCCAGACAACACAATAACCTCTATTAGCTTCGGCAGGGCTCACATTCTGCCACGAGAAAAGTTGCTGggttaaacatacagtatattttattggCATTTAGATATGTTTAGTAAGTACATTCTCCTCTACAAGATTCATGTACAATATACAAGTTCAAAAATATAGTTTGTTTGCATTGAATTCATTTCCCATTTACTCTCTTCAGGATGACAAAAATTCACATTTGCATGTTCTGGGGCCATGAGTCGGACTTTTCATGGTGATGAATCTAAAAAGATCTGGAACTAGACATGGAGCTCCTCAAAGACaagtgtcaatgtgtgtgtgtacccaaAGACGTTAGTAAGTGCACAGACGAAACCAAATGATAGACCACAAAGGTGTGCATGGGctcaaaaattgtttttttttacatttttaaaaataatattaaaaaaaattaggcatCAAGGAGCTGAAAGCTTATCAGCAGTTTCTCAGGAAAACACATGACCCTATCACACTTACATACAACaccagaagcacacacacacacacacacacacacacacacacacacaagtacaatAAATGGATGCAGAACAGTTTACAGATTACGAGCCCTGAACATCTGGGCGATCCTCACCTGTGAGAAAACAGAACACTTAGCTTCGTCTAAGGCCATGTAAAGGTATTAACAGAAAAGATTAGTATTGTAATTATGAACATAATTCAAATGGCAGAACTACATTCATAAGTGTCTGAAGAGAACTagtgaaaaatataaatgataagaGCAGTGGGGGGCGGTTGATTAAGAGACACGCTTCACAATTTTGAAATGCTGAGGCAAGAAGGATGAAAGAAACGCTTTAAACCGTGTGTGgaataatacattaaataacaaaaacaatggGAATTTAATTTCAAAACGAGAAATACTGTTGACAACATATAAATCCAGACAGATTGGAGAAGAGTTTGGTATAGTCGAAGAAGTAAAGACAGTAACAGACGGTCTGCtggaaaagtaaaataaaaatagtacaaATTCGACAGACATACCTGCAAGAATACACACCGTAAGCAGATGACCGCATAAAGAAACATTCCcatcgagaaaaaaaaaaaaaaaaaaaaaaagtcgaggATTTTTCATCAGAGAGGACCTCAAAATCCTCTGAACATGCAGTCATGTTGTGTTTTCAACAAGGACTCGGAAATTGAGTTCTTATGGTGCTCATACATACGTACATAACAGGCAATTTATtaaaaaggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU313921 True 1296 lncRNA 0.36 1 7089667 7090962

Neighbor

gene id symbol gene type direction distance location
plk2a LOC108277216,LOC108425197,LOC107653495,LOC107602251,LOC107709193,LOC107588929,LOC107706772 coding upstream 387846 6697674 ~ 6701821 (+)
LOC113544738 LOC108277217,LOC108425195 coding upstream 393998 6687467 ~ 6695669 (+)
LOC113544721 pde4d,LOC108276982,LOC108425192,LOC107704165,LOC107709115,LOC107653658,LOC108443004,LOC102789696 coding upstream 437815 6469950 ~ 6651852 (+)
depdc1b depdc1b,LOC107654254,LOC107704111,LOC107709206,LOC107602227 coding upstream 630705 6447459 ~ 6458962 (+)
elovl7b LOC108277391,LOC108425137,LOC107588931,LOC107706775,LOC107704168,LOC106571348 coding upstream 642477 6444254 ~ 6447190 (+)
tmed2 tmed2,LOC108425203 coding downstream 17545 7108507 ~ 7113994 (+)
naa25 naa25 coding downstream 36789 7127751 ~ 7152305 (+)
tor4aa tor4a coding downstream 78286 7169248 ~ 7174553 (+)
slc25a1b slc25a1,slc25a1b,LOC108425209,LOC107704153,LOC107706761 coding downstream 91986 7182948 ~ 7197818 (+)
pi4kaa pi4ka,pi4kaa,LOC108425210,LOC107751806,LOC107704152 coding downstream 108086 7199048 ~ 7243280 (+)
G264938 NA non-coding upstream 34008 7055347 ~ 7055659 (+)
G264936 NA non-coding upstream 35585 7053868 ~ 7054082 (+)
G264934 NA non-coding upstream 37727 7051504 ~ 7051940 (+)
G264933 NA non-coding upstream 38305 7051057 ~ 7051362 (+)
G264894 NA non-coding upstream 126749 6962585 ~ 6962918 (+)
G264972 NA non-coding downstream 61837 7152799 ~ 7153864 (+)
G264970 brap,LOC107602221,LOC107712082 non-coding downstream 63312 7154274 ~ 7157567 (+)
G264976 NA non-coding downstream 74166 7165128 ~ 7166073 (+)
G264986 NA non-coding downstream 157223 7248185 ~ 7249078 (+)
G265039 NA non-coding downstream 277527 7368489 ~ 7369482 (+)
G264948 NA other upstream 7226 7066871 ~ 7082441 (+)
LOC113544903 mphosph9 other upstream 894986 6169893 ~ 6194681 (+)
G264336 NA other upstream 1077765 6008800 ~ 6011902 (+)
triap1 triap1,LOC106568193 other upstream 2009024 5077853 ~ 5080643 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 3513530 3253316 ~ 3576137 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 25089 7116051 ~ 7126246 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 1084552 8175514 ~ 8187611 (+)
LOC113544929 NA other downstream 1238743 8329705 ~ 8353841 (+)
G265696 NA other downstream 1542673 8633635 ~ 8639728 (+)
G265807 LOC107756568 other downstream 1577852 8668814 ~ 8669797 (+)

Expression


Co-expression Network