G264972


Basic Information

Item Value
gene id G264972
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7152799 ~ 7153864 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU313949
AATGAAATGTGACTTGCCATTTGAAACAAGCAATGCAAACGTTTAGAATGTAAAcgttaaatacaataaatacattactGTAACTGCAGTAGTATAGTTGAAACCTTTAACATTTAGTGTGAGGATTTGGTTTTCAGGATAACCATATTGAACTTTCCCTTATTGACTTGCCTTCAGAAGAGAGGGCAAACCATGGAAAATGTGATTAATTCAGTTTCCCTATatctttttctgtgttaaagGTTAAATTTAACTACAATTGGGCAACCGGACtttacatttgaaatgaaacattatCTTTATGAAGCAGTGTGAGTGtattatatcatcattattattgtcaCCATTTTGAAATTCACATGCtacatttaaaagcaaatttACTCATATTGCTGCTGCCTGTGAAATTAATTGACAGGGCTCATCAAACGAACTCTTTAACTCCACTAGAGCTGACAGTAATGGAATGCTTTTTGCTGTGTGCATGACCAAGTGGGAAATGGGAAGTCACGAAGGATCTGTTTGAACGGCTCTTGAGTTTTTCCGAGACCTCTGACTTGTCCGAGTTGCAATTCCGTGAGGTCACTTCAGCGTGGCAGTGCTCATAGTAAATCAAAAGTAAGAACAAGAAATAACAGCGTGATTTAAGGTTTTTAAGCAGTCTTTTGAGTTTCCGTTTCTAATTGTTTATATAATCTCTAAATACTGGGTGATACTTTGACTTAATTGAAATTGAAAGATTTTCAGACTGCTCTTTTGTGTAGTTTTAGGCACTATAAACAGTGAATCATCAGAtcatcatattaaaaaataaattaagcacTAACTAAACAACTCTTTAATTCCAGTATTTgtagagagaggacagaggccCCCTAGGGCTCCTCTGTTTCTGACTTCAGATGTCTGAGTTCAGCTGAACCCTGTAATGTGAGTTCCCAGTTGTCGCGGACGCAGCATTTGACCACTGACATACAACTAGTGATTGAGGAAAACGGAGTGGATTGCATAACTAGGTCATATCCATGTTTGGGGAAAGTGAGAGGTATTTCaaccagaaaacaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU313949 True 1066 lncRNA 0.37 1 7152799 7153864

Neighbor

gene id symbol gene type direction distance location
naa25 naa25 coding upstream 494 7127751 ~ 7152305 (+)
tmed2 tmed2,LOC108425203 coding upstream 38805 7108507 ~ 7113994 (+)
plk2a LOC108277216,LOC108425197,LOC107653495,LOC107602251,LOC107709193,LOC107588929,LOC107706772 coding upstream 450978 6697674 ~ 6701821 (+)
LOC113544738 LOC108277217,LOC108425195 coding upstream 457130 6687467 ~ 6695669 (+)
LOC113544721 pde4d,LOC108276982,LOC108425192,LOC107704165,LOC107709115,LOC107653658,LOC108443004,LOC102789696 coding upstream 500947 6469950 ~ 6651852 (+)
tor4aa tor4a coding downstream 15384 7169248 ~ 7174553 (+)
slc25a1b slc25a1,slc25a1b,LOC108425209,LOC107704153,LOC107706761 coding downstream 29084 7182948 ~ 7197818 (+)
pi4kaa pi4ka,pi4kaa,LOC108425210,LOC107751806,LOC107704152 coding downstream 45184 7199048 ~ 7243280 (+)
ube2l3a ube2l3,ube2l3a,ube2l3b,ub2l3,LOC106562742,LOC105014760,LOC105911915,LOC107599129 coding downstream 113637 7267501 ~ 7270847 (+)
ankrd34ba LOC108276976 coding downstream 164788 7318652 ~ 7338448 (+)
G264944 NA non-coding upstream 61837 7089667 ~ 7090962 (+)
G264938 NA non-coding upstream 97140 7055347 ~ 7055659 (+)
G264936 NA non-coding upstream 98717 7053868 ~ 7054082 (+)
G264934 NA non-coding upstream 100859 7051504 ~ 7051940 (+)
G264933 NA non-coding upstream 101437 7051057 ~ 7051362 (+)
G264970 brap,LOC107602221,LOC107712082 non-coding downstream 410 7154274 ~ 7157567 (+)
G264976 NA non-coding downstream 11264 7165128 ~ 7166073 (+)
G264986 NA non-coding downstream 94321 7248185 ~ 7249078 (+)
G265039 NA non-coding downstream 214625 7368489 ~ 7369482 (+)
G265023 NA non-coding downstream 263370 7417234 ~ 7417633 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other upstream 26553 7116051 ~ 7126246 (+)
G264948 NA other upstream 70358 7066871 ~ 7082441 (+)
LOC113544903 mphosph9 other upstream 958118 6169893 ~ 6194681 (+)
G264336 NA other upstream 1140897 6008800 ~ 6011902 (+)
triap1 triap1,LOC106568193 other upstream 2072156 5077853 ~ 5080643 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 1021650 8175514 ~ 8187611 (+)
LOC113544929 NA other downstream 1175841 8329705 ~ 8353841 (+)
G265696 NA other downstream 1479771 8633635 ~ 8639728 (+)
G265807 LOC107756568 other downstream 1514950 8668814 ~ 8669797 (+)
LOC113534874 LOC108276751 other downstream 2103079 9256943 ~ 9264111 (+)

Expression


Co-expression Network