G264986


Basic Information

Item Value
gene id G264986
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7248185 ~ 7249078 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU313963
GATCTCTGAGGAACTGAAACGTGAAACCATGGTGTTGTCCGCAAGCCACGTTCAAGGCTAAAAAGACTGTAATAAAGACAGTAATTGAACAAATATTTGCAACTGAAATATACCATTCTGAGGTAAACAAATCCCTaaaacagacagatatataTTCAGAATGATGTCTATAAAGTCAATGAGACATACAGACACTGGAATGGGCAGAGACTGGCTAGAAGACAGTGAAAAAAGGCTGGCTGAATGCTCATATAGGCAGCAGGAACACAGTATTAGGTGCAATATGGCCTCAAGAAAAAAGGACGTGGAAAACACAGAGGTTTGTAGAGCTGGCTTTGGTTTACTTAGGGGTTGGTTTGGTAAATTGAGGTCCAAGTGGTTGGTTAACATTTAGCAGTGTGAGACTTCACAATACTACACAGGAAATACGTAGCGCTGCTGCAACAGGCTACAAATCATAGCAGCAAATCAAAGATCAATCTTCTTCGGTCTCAAAATATTGATCAAGTGATAATTAAGATAACTGAGCAAGTTCTCTAGATTCTTTCAAAAGGTCATTCTTAAGGGACCTTGCTGTCAAATCGCAAAGTGCATTTTATAAAGCTTATATTCCATCTCTAACCACACAACACGCCTGCATGCCACTTGCTTTTTGACGGACTTGGGAGGTGAAGGTGAGCAGAAGAGAGTTCATTCTTACAAAAGCTTTGGCTTTGTTGGTCATATGTAAATAGGACACCCCCTTGACAACCTCcaaagaaataaaggaaatggAATCCACTAGGAGCCTTGAACCATGATAGCGTGACAACACCACTGCTTTCAATAAAGAACACAAACACGACAAGAGTGCTTGTTACACAATTAATGAAAGTCCCATATTGTATCAACAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU313963 True 894 lncRNA 0.40 1 7248185 7249078

Neighbor

gene id symbol gene type direction distance location
pi4kaa pi4ka,pi4kaa,LOC108425210,LOC107751806,LOC107704152 coding upstream 4905 7199048 ~ 7243280 (+)
slc25a1b slc25a1,slc25a1b,LOC108425209,LOC107704153,LOC107706761 coding upstream 50367 7182948 ~ 7197818 (+)
tor4aa tor4a coding upstream 73632 7169248 ~ 7174553 (+)
naa25 naa25 coding upstream 95880 7127751 ~ 7152305 (+)
tmed2 tmed2,LOC108425203 coding upstream 134191 7108507 ~ 7113994 (+)
ube2l3a ube2l3,ube2l3a,ube2l3b,ub2l3,LOC106562742,LOC105014760,LOC105911915,LOC107599129 coding downstream 18423 7267501 ~ 7270847 (+)
ankrd34ba LOC108276976 coding downstream 69574 7318652 ~ 7338448 (+)
trnar-ccu_6 NA coding downstream 119402 7368480 ~ 7368552 (+)
trnam-cau_30 NA coding downstream 119484 7368562 ~ 7368633 (+)
trnar-ccu_7 NA coding downstream 120185 7369263 ~ 7369335 (+)
G264976 NA non-coding upstream 82112 7165128 ~ 7166073 (+)
G264970 brap,LOC107602221,LOC107712082 non-coding upstream 90618 7154274 ~ 7157567 (+)
G264972 NA non-coding upstream 94321 7152799 ~ 7153864 (+)
G264944 NA non-coding upstream 157223 7089667 ~ 7090962 (+)
G264938 NA non-coding upstream 192526 7055347 ~ 7055659 (+)
G265039 NA non-coding downstream 119411 7368489 ~ 7369482 (+)
G265023 NA non-coding downstream 168156 7417234 ~ 7417633 (+)
G265052 NA non-coding downstream 170932 7420010 ~ 7420244 (+)
G265053 NA non-coding downstream 173692 7422770 ~ 7423011 (+)
LOC117599325 NA non-coding downstream 182284 7431362 ~ 7432343 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other upstream 121939 7116051 ~ 7126246 (+)
G264948 NA other upstream 165744 7066871 ~ 7082441 (+)
LOC113544903 mphosph9 other upstream 1053504 6169893 ~ 6194681 (+)
G264336 NA other upstream 1236283 6008800 ~ 6011902 (+)
triap1 triap1,LOC106568193 other upstream 2167542 5077853 ~ 5080643 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 926436 8175514 ~ 8187611 (+)
LOC113544929 NA other downstream 1080627 8329705 ~ 8353841 (+)
G265696 NA other downstream 1384557 8633635 ~ 8639728 (+)
G265807 LOC107756568 other downstream 1419736 8668814 ~ 8669797 (+)
LOC113534874 LOC108276751 other downstream 2007865 9256943 ~ 9264111 (+)

Expression


Co-expression Network