G265418



Basic Information


Item Value
gene id G265418
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7848803 ~ 7849034 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU314481
CTGTTCTAGGTGGATCTGAATCTAGATAATAGAATATGCGTTTTTCAGTCTGTTATTTTCTCTCAACATAAAGAGTAAAGTAAATTAGAGTGAAGTAAAGTGAATTATTGTTGCCAGTGATTTAATGCCCATACCACTATGGGTAGGCCAAATACCCAACCTGaaccccacagattttttttaaacgaaaGACAAGGATGATGTTGTGCATAAGACAAATGGTTATCTGGAA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU314481 True 232 lncRNA 0.35 1 7848803 7849034

Neighbor


gene id symbol gene type direction distance location
LOC113544796 myo18b,LOC108276812 coding upstream 78359 7718055 ~ 7770444 (+)
grk3 grk3,LOC108276813 coding upstream 131454 7628081 ~ 7717349 (+)
cryba4 cryba4,LOC103045114 coding upstream 228230 7618299 ~ 7620573 (+)
LOC117599324 il1b coding upstream 413877 7432541 ~ 7434926 (+)
oclna LOC108276968 coding upstream 455323 7384282 ~ 7393480 (+)
tpst2 tpst2,ubc coding downstream 6293 7855327 ~ 7858825 (+)
ubc ubb,ubc,LOC107553588,LOC100190459,LOC100194618,LOC105015226,LOC107658630 coding downstream 11832 7860866 ~ 7864143 (+)
scarb1 scarb1 coding downstream 41007 7890041 ~ 7910255 (+)
cetn3 cetn3,LOC107589032,LOC107602084,LOC107758597,LOC107658563,LOC107689496 coding downstream 88194 7937228 ~ 7944128 (+)
LOC117595648 NA coding downstream 351046 8200080 ~ 8217268 (+)
G265383 NA non-coding upstream 926 7844793 ~ 7847877 (+)
G265417 NA non-coding upstream 4147 7843789 ~ 7844656 (+)
G265331 NA non-coding upstream 139010 7707400 ~ 7709793 (+)
G265328 NA non-coding upstream 187723 7659527 ~ 7661080 (+)
G265326 NA non-coding upstream 208067 7638978 ~ 7640736 (+)
G265419 NA non-coding downstream 2336 7851370 ~ 7851629 (+)
G265420 NA non-coding downstream 2881 7851915 ~ 7852265 (+)
LOC117599395 NA non-coding downstream 126625 7975659 ~ 7977423 (+)
G265490 hapln1,LOC108261073,LOC108425247 non-coding downstream 133625 7982659 ~ 7986096 (+)
G265520 NA non-coding downstream 246369 8095403 ~ 8097573 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other upstream 722557 7116051 ~ 7126246 (+)
G264948 NA other upstream 766362 7066871 ~ 7082441 (+)
LOC113544903 mphosph9 other upstream 1654122 6169893 ~ 6194681 (+)
G264336 NA other upstream 1836901 6008800 ~ 6011902 (+)
triap1 triap1,LOC106568193 other upstream 2768160 5077853 ~ 5080643 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 326480 8175514 ~ 8187611 (+)
LOC113544929 NA other downstream 480671 8329705 ~ 8353841 (+)
G265696 NA other downstream 784601 8633635 ~ 8639728 (+)
G265807 LOC107756568 other downstream 819780 8668814 ~ 8669797 (+)
LOC113534874 LOC108276751 other downstream 1407909 9256943 ~ 9264111 (+)

Expression



Co-expression Network