G265419


Basic Information

Item Value
gene id G265419
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7851370 ~ 7851629 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU314482
CGAAACCTCGACTATATCTTCCCTTCCTCCatagcttcctgcaccctatcatcccttccagaccctgactccttttcctctctaCCACTGGTGTTAGCCACACATACACTTTCCTCTTCTCACTTTCTGCATCCAAGGACATTCTctgccctctatcttctaaacccaggaaggTTTCTTGCCCTATTCCTCGGATGTGTTCCAAAACAAtcagagagaattaagaacagcagagaaagtggaagaaatcacaactcGAC

Function

GO: NA

KEGG:

id description
ko04724 Glutamatergic synapse
ko04721 Synaptic vesicle cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU314482 True 260 lncRNA 0.46 1 7851370 7851629

Neighbor

gene id symbol gene type direction distance location
LOC113544796 myo18b,LOC108276812 coding upstream 80926 7718055 ~ 7770444 (+)
grk3 grk3,LOC108276813 coding upstream 134021 7628081 ~ 7717349 (+)
cryba4 cryba4,LOC103045114 coding upstream 230797 7618299 ~ 7620573 (+)
LOC117599324 il1b coding upstream 416444 7432541 ~ 7434926 (+)
oclna LOC108276968 coding upstream 457890 7384282 ~ 7393480 (+)
tpst2 tpst2,ubc coding downstream 3698 7855327 ~ 7858825 (+)
ubc ubb,ubc,LOC107553588,LOC100190459,LOC100194618,LOC105015226,LOC107658630 coding downstream 9237 7860866 ~ 7864143 (+)
scarb1 scarb1 coding downstream 38412 7890041 ~ 7910255 (+)
cetn3 cetn3,LOC107589032,LOC107602084,LOC107758597,LOC107658563,LOC107689496 coding downstream 85599 7937228 ~ 7944128 (+)
LOC117595648 NA coding downstream 348451 8200080 ~ 8217268 (+)
G265418 NA non-coding upstream 2336 7848803 ~ 7849034 (+)
G265383 NA non-coding upstream 3493 7844793 ~ 7847877 (+)
G265417 NA non-coding upstream 6714 7843789 ~ 7844656 (+)
G265331 NA non-coding upstream 141577 7707400 ~ 7709793 (+)
G265328 NA non-coding upstream 190290 7659527 ~ 7661080 (+)
G265420 NA non-coding downstream 286 7851915 ~ 7852265 (+)
LOC117599395 NA non-coding downstream 124030 7975659 ~ 7977423 (+)
G265490 hapln1,LOC108261073,LOC108425247 non-coding downstream 131030 7982659 ~ 7986096 (+)
G265520 NA non-coding downstream 243774 8095403 ~ 8097573 (+)
G265544 NA non-coding downstream 337551 8189180 ~ 8189799 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other upstream 725124 7116051 ~ 7126246 (+)
G264948 NA other upstream 768929 7066871 ~ 7082441 (+)
LOC113544903 mphosph9 other upstream 1656689 6169893 ~ 6194681 (+)
G264336 NA other upstream 1839468 6008800 ~ 6011902 (+)
triap1 triap1,LOC106568193 other upstream 2770727 5077853 ~ 5080643 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 323885 8175514 ~ 8187611 (+)
LOC113544929 NA other downstream 478076 8329705 ~ 8353841 (+)
G265696 NA other downstream 782006 8633635 ~ 8639728 (+)
G265807 LOC107756568 other downstream 817185 8668814 ~ 8669797 (+)
LOC113534874 LOC108276751 other downstream 1405314 9256943 ~ 9264111 (+)

Expression


Co-expression Network