LOC113544929


Basic Information

Item Value
gene id LOC113544929
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 8329705 ~ 8353841 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU314760
gaatcgcCTGAAGGACGACAACGAGGATTATATACTTAAATATGGCGTCCTGCGTGAGAGCTGGTATGTCTGACAACCAGTTCGAATTAACTATAGAAGTTCCCTTTCCTTCACAGAGGGAGGTGTCCATTGCACTCCAGTCCTTGTCCCCTGATCGTGAGCCAGGGACAGGGGGTACCATAAGAACTCTGAGTGCTTCAGCTAATGCACTATCTGTAAAATGGAATGCTGTTGAGGCTCGCAGTCTTCGTGTATCAGTAGGCTCGTTTTTAGATCACCTGGCACTTGTAATGGAAACTATGGATGCATTTGGACAACCAGCTCTACCGTGAAACTAATGGAACATGCTGACAGAAAATTTGCCCAgattacattcatttaaatctgtgctatttaaaaatattgtaatgattatgtaataaaaatctTATTACTTGGACCAGTATTGAAAGTAAATTGTGGAGAAAAACATCCTATTAAAAcaacctattaaaaaaaataatctgtggATGCACTCTACAATCCAATGTGGGGTAGTTGAGTATCTAGAATGAACATCTAGTTAAAGCCCAGCAAGATGTGATTTAATATACAAAtaggcaa
>XM_026944007.2
GTGATGGTCAGGTTGCTTCTGCTGACTTGggacaccattttttttctcctgttggTATCTTTTGGAAAGCGATACATCTGGATCCCTTTTCAGACCGATTGGTTCATCCAAATGCCGCACAGCCAACCAATGTATGCCAGAACTATAGAAGTTCCCTTTCCTTCACAGAGGGAGGTGTCCATTGCACTCCAGTCCTTGTCCCCTGATCGTGAGCCAGGGACAGGGGGTACCATAAGAACTCTGAGTGCTTCAGCTAATGCACTATCTGTAAAATGGAATGCTGTTGAGGCTCGCAGTCTTCGTGTATCAGTAGGCTCGTTTTTAGATCACCTGGCACTTGTAATGGAAACTATGGATGCATTTGGACAACCAGCTCTACCGTGAAACTAATGGAACATGCTGACAGAAAATTTGCCCAgattacattcatttaaatctgtgctatttaaaaatattgtaatgattatgtaataaaaatctTATTACTTGGACCAGTATTGAAAGTAAATTGTGGAGAAAAACATCCTATTAAAAcaacctattaaaaaaaataatctgtggATGCACTCTACAATCCAATGTGGGGTAGTTGAGTATCTAGAATGAACATCTAGTTAAAGCCCAGCAAGATGTGATTTAATATACAAAtaggcaaacaaataaataaataactgatatgtg
>XR_003404563.2
CAATCGCAATCCAACTccagtagaagaagaagaatcgcCTGAAGGACGACAACGAGGATTATATACTTAAATATGGCGTCCTGCGTGAGAGCTGGTATGTCTGACAACCAGTTCGAATTAACTATAGAAGTTCCCTTTCCTTCACAGAGGGAGGTGTCCATTGCACTCCAGTCCTTGTCCCCTGATCGTGAGCCAGGGACAGGGGGTACCATAAGAACTCTGAGTGCTTCAGCTAATGCACTATCTGTAAAATGGAATGCTGTTGAGGCTCGCAGTCTTCGTGTATCAGTAGGCTCGTTTTTAGATCACCTGGCACTTGTAATGGAAACTATGGATGCATTTGGACAACCAGCTCTACCGTGAAACTAATGGAACATGCTGACAGAAAATTTGCCCAgattacattcatttaaatctgtgctatttaaaaatattgtaatgattatgtaataaaaatctTATTACTTGGACCAGTATTGAAAGTAAATTGTGGAGAAAAACATCCTATTAAAAcaacctattaaaaaaaataatctgtggATGCACTCTACAATCCAATGTGGGGTAGTTGAGTATCTAGAATGAACATCTAGTTAAAGCCCAGCAAGATGTGATTTAATATACAAAtaggcaaacaaataaataaataactgatatgtg
>XR_003404564.2
gtagaagaagaagaatcgcCTGAAGGACGACAACGAGGATTATATACTTAAATATGGCGTCCTGCGTGAGAGCTGTATGCCAGAACTATAGAAGTTCCCTTTCCTTCACAGAGGGAGGTGTCCATTGCACTCCAGTCCTTGTCCCCTGATCGTGAGCCAGGGACAGGGGGTACCATAAGAACTCTGAGTGCTTCAGCTAATGCACTATCTGTAAAATGGAATGCTGTTGAGGCTCGCAGTCTTCGTGTATCAGTAGGCTCGTTTTTAGATCACCTGGCACTTGTAATGGAAACTATGGATGCATTTGGACAACCAGCTCTACCGTGAAACTAATGGAACATGCTGACAGAAAATTTGCCCAgattacattcatttaaatctgtgctatttaaaaatattgtaatgattatgtaataaaaatctTATTACTTGGACCAGTATTGAAAGTAAATTGTGGAGAAAAACATCCTATTAAAAcaacctattaaaaaaaataatctgtggATGCACTCTACAATCCAATGTGGGGTAGTTGAGTATCTAGAATGAACATCTAGTTAAAGCCCAGCAAGATGTGATTTAATATACAAAtaggcaaacaaataaataaataactgatatgtg
>XR_004579838.1
gattttgtatGGCACGGCAGATTCGTACTCGCTAACAGATTCGTAGTTAGCTAACAACTAGTTATGATCCGGTTTGTTCGAACCGTTCGAGCAAAATGAGTCAGTGGCTCTTTAACTGAATCGAAGTTTTGAAACCTGTTTCGCACATGACTCGACGTACATAAACTAAAGTATGCCAGAACTATAGAAGTTCCCTTTCCTTCACAGAGGGAGGTGTCCATTGCACTCCAGTCCTTGTCCCCTGATCGTGAGCCAGGGACAGGGGGTACCATAAGAACTCTGAGTGCTTCAGCTAATGCACTATCTGTAAAATGGAATGCTGTTGAGGCTCGCAGTCTTCGTGTATCAGTAGGCTCGTTTTTAGATCACCTGGCACTTGTAATGGAAACTATGGATGCATTTGGACAACCAGCTCTACCGTGAAACTAATGGAACATGCTGACAGAAAATTTGCCCAgattacattcatttaaatctgtgctatttaaaaatattgtaatgattatgtaataaaaatctTATTACTTGGACCAGTATTGAAAGTAAATTGTGGAGAAAAACATCCTATTAAAAcaacctattaaaaaaaataatctgtggATGCACTCTACAATCCAATGTGGGGTAGTTGAGTATCTAGAATGAACATCTAGTTAAAGCCCAGCAAGATGTGATTTAATATACAAAtaggcaaacaaataaataaataactgatatgtg

Function

GO: NA

KEGG:

id description
K15902 PCC1, LAGE3; EKC/KEOPS complex subunit PCC1/LAGE3

RNA

RNA id representative length rna type GC content exon number start site end site
TU314760 False 603 TUCP 0.39 3 8333502 8353815
XM_026944007.2 False 681 mRNA 0.39 3 8329705 8353841
XR_003404563.2 False 660 misc_RNA 0.39 3 8333471 8353841
XR_003404564.2 False 624 misc_RNA 0.38 3 8333490 8353841
XR_004579838.1 True 720 misc_RNA 0.38 3 8333618 8353841

Neighbor

gene id symbol gene type direction distance location
LOC113544932 NA coding upstream 53382 8275047 ~ 8276323 (+)
LOC117595648 NA coding upstream 112437 8200080 ~ 8217268 (+)
cetn3 cetn3,LOC107589032,LOC107602084,LOC107758597,LOC107658563,LOC107689496 coding upstream 385577 7937228 ~ 7944128 (+)
scarb1 scarb1 coding upstream 419450 7890041 ~ 7910255 (+)
ubc ubb,ubc,LOC107553588,LOC100190459,LOC100194618,LOC105015226,LOC107658630 coding upstream 465562 7860866 ~ 7864143 (+)
rnft1 rnft1 coding downstream 361588 8715429 ~ 8731985 (+)
si:ch211-244c8.4 LOC108277057 coding downstream 718588 9072429 ~ 9076274 (+)
zdhhc20a zdhhc20a,LOC108276908,LOC107743391,LOC108411113,LOC107697429,LOC107589301 coding downstream 781319 9135160 ~ 9151699 (+)
smyd4 smyd4 coding downstream 862939 9216780 ~ 9252133 (+)
uspl1 uspl1 coding downstream 1011506 9365347 ~ 9400306 (+)
G265622 NA non-coding upstream 26786 8299824 ~ 8302919 (+)
G265565 NA non-coding upstream 68951 8260516 ~ 8260754 (+)
G265564 NA non-coding upstream 69302 8260091 ~ 8260403 (+)
G265553 NA non-coding upstream 76497 8196581 ~ 8253208 (+)
G265544 NA non-coding upstream 139906 8189180 ~ 8189799 (+)
G265638 NA non-coding downstream 20710 8374551 ~ 8374809 (+)
G265647 NA non-coding downstream 55805 8409646 ~ 8409861 (+)
G265648 NA non-coding downstream 57428 8411269 ~ 8411471 (+)
G265655 NA non-coding downstream 97348 8451189 ~ 8451413 (+)
LOC113523758 NA non-coding downstream 196017 8549858 ~ 8643482 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other upstream 142094 8175514 ~ 8187611 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other upstream 1203459 7116051 ~ 7126246 (+)
G264948 NA other upstream 1247264 7066871 ~ 7082441 (+)
LOC113544903 mphosph9 other upstream 2135024 6169893 ~ 6194681 (+)
G264336 NA other upstream 2317803 6008800 ~ 6011902 (+)
G265696 NA other downstream 279794 8633635 ~ 8639728 (+)
G265807 LOC107756568 other downstream 314973 8668814 ~ 8669797 (+)
LOC113534874 LOC108276751 other downstream 903102 9256943 ~ 9264111 (+)
G266161 NA other downstream 981960 9335801 ~ 9336290 (+)
LOC113543674 NA other downstream 1065824 9419665 ~ 9424855 (+)

Expression


Co-expression Network