G265696


Basic Information

Item Value
gene id G265696
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 8633635 ~ 8639728 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU314836
ACTGACACACCTGGGTTTACTCACTACTAGGTGCCACCACTACCTGTCAGGGAAGAATTCAGATGTTGTGTagagtgaaggctagtctgtctggtccaatcccacagaagagctactgtagcacaaattgctgaaaacattaatgctggctatggtAGAAAGGTgttagaacacacagtgcatcacagtttGCTGCATATATGGGGCTGAGTAAACTGCAGACCAGTCacagtgcccatgctgacccctgtccattGCAGAAGGCATCTAAAAtgacacgtgagcatcagaactggaccatggagcaatgaaagaaggtggcctggtctgatgaatcaagttttcttttacatcatatggatggctgcatgtatgtgtgtcgcttacctgaggaagagatggtaccaggatgtactatgggaagaagacgagcaggtggaggcagtgtgatgctctgggccaTGTTCAGGGGAAATCTTGgctcctggcattcatgtagctgttactttgacacgtaccacctatcTAAACATTGGTGTAGACCAAGTATtgcccttcatggcaacggtattccctaatgacagtggcctctttcagcaggatagtgcgcactgccacactgcaaaatttgttcaggaatggtttgagttCAAGGTTGAGTTCATCTCagtctgatcaagcatctgtgggatgtgctagacaaacaagtcagatccatggaggccccaactTGCAACTTACAAGACAGAAAGGATctgtcagataccacagcacacctccaGAGGtattgtggagtccatgcctcaatgggtcagagctgttttggccgCACAAGGGGTCCCTACACAATACACTTGTTGGTTCTGATCacttaatgaaatgaaagaacaaTAACATCACGTGTAAGACTGTATATGTGATAGTTTCAACACATTATGaaatcaataattttgtgctatcgttttcatctgttgtatttttcacgttctcttctaccatattttcatttttctttctcttgaagtgcgcttttgtattttgtcaagacagcgagcggaggccattcacaccggatccacaccgtctaaaataatatcaacaaatcttcgactaaggtgcgttaaacaacatgtctaacattcagcttgttcagtgtgttgagtgcaggatgtttagtcactcttcctctgttgttaatgtaaatgcatgttagttagctctctgacggagaagattgcagcattagaggtgcgcatccagactctagagagggttagtgagagtgagagcagcataGTTTCTGTAGGCAAAAGTCTGGACGCCTTAGGCAAagttagtaatcccccaactctggaattagagccctcacagcggggcgaatgggtgacgacttggaggcataatcgcaaagccaaagctaacgctacggctcgcccacaggagcaccactcctctccgcttcacgtgtccaataggtttgctctcctcagtgaagtatccactgagaaacctgaaagagctctggttataggtgactctatcttgcggcatgtgaaattagctaggtAGGTGtattagttaggtgtataccgggagccagggcgccggacatagcaggtaatcttagggtcttaggcaagcataggttctcaaagatagttattcatgtaggagctaatgatatacaccttcgtcagtctgagattactaagagtaacttggtagaggtgtgtaaattagcgaaggcaaTGTCCGATgcagtagtatgctctggccccatcccaatgtggCGTggtgatgtagcttacagcaggttatggtcactgaactgctggatgtccaggtggtgctccgaaaacaatgtgggctttatagataattggactaactttgagggcaaggctggcctgttagggcgggacggtgtccatcccactcgggaaggtgctgcccTCATtccttgcagcatagcacatagtctcagaacaggcctagttaatcggtgacaatccagggccaaggccagggagcagacaagcaggctaaaccgaccgtctgctagctgtactgagtcgtcacttaggttccaacgtattgagactgtgtctgttccccgagctaaacaaaattatagacatactcagacagtttgttttagtaacctaattaacataaaattaaaccaaaagctaggactgttgaatattagatctcttacgtctaaagcacttattgttaatgaaaccattactgatcaggagtttgatgtactgtgtttaacagaaacgtggattaaaccaaatgagtttgtagcattaaatgaagctagtcctcccgggtacagttacatacatcagccccgtctaactggcagaaaaggaggcgtcgcagtaatttataatgataatctaggcgtcacacaaaaacctagtcataaattcaacgcatttgaagttctttattctaacataacatacgtagccactaaaaataagtctactcaggtgattccagtaattattatttacagacccctaGGGCCATATTCCGAATTCCTATgcgaatttgcggatttcatctctaacctggttgtttcagacaaggcattaattgttggagactttaatattcattttgataatccagatgaccctctgagaacagcagttgtgtctgAGAACCCCTatattctgtaggggttaatcagaatataataggacccacccatagtggtggtcacactcttgatttaatactaacaatcggattaaatatagaaaatatagtctcatgtccacagtctgaagctatctcagatcattacctcatctcatttaaaatgtgtattaatcatagtatatgcaccttgccacgtcaccgtgtcaaacgtacgttcacatcaacaactacacagagttttatcagtaatctcccagatttatcagccatgattggatcaccgtctgatcccaaagaacttgaccaggcaactgaatgtttagaatcaacgttctgcaactcgctagataaggtagccccacttaaaagaaaaataattagggagaaaaagctagcaccctggtatagcaatcacacacgaactttaaaacagaccactcgaaaactagaacgtaaatggcgtcaaactaaattggtagtatttcaaatagcatggaaggactttgagctataagaaagctcttagtgctgctagatcaatgtatctctccaccctaattgaagataacagaaataatcctagatgcttatttaatactgtagcaaaattaactaggaataagaccacaatagaaacacgcacacaatcattatatagtaGCGATGACTTCAtaaattttttcaatggtaaaattaaaaatatcaggctagaaattcagactatttaaaactggacagttctataactaactctgtagatgataatataataatattagataaacaactacaacgctttactccccttgaagagactgaactaatttcactaatttcatcctcaaaatcatcaacctgtatgctagatacTTTAcgtacttgtttcctcaaatagataattcctgaaacaatcaaacctcttttaaagataattaattcttcccttagcattggctatgtacttaaatcttttaaattagcagttatcaagcccttgattaaaaaacctgaccttgacccctgtcagctgtctaactatagaccaatatcaaaccaatatcccctttatctccaaggtcctagaaaaggttgtatcacagcagctatgctcatacttacataggaataacattcatgaaatgtatcagtcaggatttaggcctcatcatagcacagagacagcactggtaaaagttgtaaatgacttactactggcctctgatcagggttgtgtctccttgctggtgctgcttgaccttagtgcagcttttgataccattgatcacgctattctcctcgatagactagaaaatgtagtaggcattaagggaacagccctttcctggctcaggtcttatttgactgatcgttatcagtttgtaaacgtaaatggtgacttctcttctcatactcaGGTAaggtttggtgttccgcaaggctctgttttaggcccactgttcttttctctatatatgctacctctgggcaaaattatccgtaaacatggtattagcttccactgttaagctgatgacacacagttgtatgtttcagcaaagccagatgacagacaccagcttaataaagttgaggaatgtgtaaaagacattagaaactggatgcttattaactttctcttacttaattctaacaagacagaaatacttgtactaggaccacatgcagttagaagtaagctttctgattacataataactctggatgacctttctgtttcatgatgtgtagcagtaaaagaccttggtgtgattatcaactctagtctttcttttgaagctcatgtagataatataactaggattgctttctttcatctcagaaatattggtaaaataagaaatatattgtcactacacgatgcagaaaaattagttatgcttttgttacctctaggttggattattgtaacgCCTTattgtctggatgttccagtagatgcataaacaagctccagttagtccagaatgcagcagcgagagtccttactagaaccagaagatatgaccacatcacccctatcttatctacactgcattggctccctatcaaatttcgtattgattataaaatactactattgacctataaagcactaaatggtctcgcgccacagcaCCTGAGCgaaattttggtcttttatgatccgccacacctactcagatcaaaaggtgcaggctatttgttggtacctcgaataatgcgggctacagctgggggtagagctttctcttacaaagccccacagttatggaacagccttccacttagtgttcggggctcagacacagtctcagtgtttaagtctaggctgaaaacatatttgtttagtcaagccttttgtgaatagttttcttaggtacaggggcaggtctggagggtttcacaggcatagagtgttgtggtgaactgggatgtttggatgctgtcgcccccccactctcacacgttcactcaggtttgtcgacggtggagtggctggctgccttatgtctcagggtgccctcatgtctgtgttagcttctggctcccCCTTTTAGTTAttctgtcatagctagtcttgccggagtccctgcttgcactctgcatgcaaagtacatcgtgcttaaccattagaggacaaaagctcacctaacaatctcttcctttctctccatctctctctctccctcactctctgtcaagctacacatgctacttctgagatgccagagatgccagtgttcctgaccccttctgctcctcctcgctgcctgacccatcctgatgcccttcttctggttggagttctcatcggttgagttcgctcgctgctgctgggggtggccccatatggacggcctgaagaactgtttggattgctggggatggcgccacctgggggctgtggagatggcatggggatcacatatggggagctgtactgtaatggcttgggactgcgattgctgtagtggctttggggctgcagttgccatgagcagcttcgtactcaggactccatcagtggacagtggatagattttaaccagccggacttcttgcaaaaactgtgatgaatttattggttgcacaattgcactatttgtccatatagtacacaataatagaagggatttatttataatcgcactatccgttgcacccagatgaggatgggttcccttttgagcctggttcctctcaaggtttcttcctcatatcatctcggggagtttttccttgccaccgtcggcactggcttgatcattagggataaattcacagtgataaattcaaatatttacaatatatttttgtgaatccatttatttctgtaaagctgctttgtgacaatgtccttgAATTATGGTCCATTTGTTTGTGAAGGTTATGCTGTTAGGTGTTTTAATATTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU314836 True 6094 TUCP 0.42 1 8633635 8639728

Neighbor

gene id symbol gene type direction distance location
LOC113544932 NA coding upstream 357312 8275047 ~ 8276323 (+)
LOC117595648 NA coding upstream 416367 8200080 ~ 8217268 (+)
cetn3 cetn3,LOC107589032,LOC107602084,LOC107758597,LOC107658563,LOC107689496 coding upstream 689507 7937228 ~ 7944128 (+)
scarb1 scarb1 coding upstream 723380 7890041 ~ 7910255 (+)
ubc ubb,ubc,LOC107553588,LOC100190459,LOC100194618,LOC105015226,LOC107658630 coding upstream 769492 7860866 ~ 7864143 (+)
rnft1 rnft1 coding downstream 75701 8715429 ~ 8731985 (+)
si:ch211-244c8.4 LOC108277057 coding downstream 432701 9072429 ~ 9076274 (+)
zdhhc20a zdhhc20a,LOC108276908,LOC107743391,LOC108411113,LOC107697429,LOC107589301 coding downstream 495432 9135160 ~ 9151699 (+)
smyd4 smyd4 coding downstream 577052 9216780 ~ 9252133 (+)
uspl1 uspl1 coding downstream 725619 9365347 ~ 9400306 (+)
G265655 NA non-coding upstream 182222 8451189 ~ 8451413 (+)
G265648 NA non-coding upstream 222164 8411269 ~ 8411471 (+)
G265647 NA non-coding upstream 223774 8409646 ~ 8409861 (+)
G265638 NA non-coding upstream 258826 8374551 ~ 8374809 (+)
G265635 NA non-coding upstream 291348 8340510 ~ 8342287 (+)
G265699 NA non-coding downstream 546 8640274 ~ 8640593 (+)
G265797 NA non-coding downstream 3829 8643557 ~ 8646201 (+)
G265801 NA non-coding downstream 11293 8651021 ~ 8651367 (+)
G265802 NA non-coding downstream 16970 8656698 ~ 8657086 (+)
G265809 NA non-coding downstream 25054 8664782 ~ 8665655 (+)
LOC113544929 NA other upstream 279794 8329705 ~ 8353841 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other upstream 446024 8175514 ~ 8187611 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other upstream 1507389 7116051 ~ 7126246 (+)
G264948 NA other upstream 1551194 7066871 ~ 7082441 (+)
LOC113544903 mphosph9 other upstream 2438954 6169893 ~ 6194681 (+)
G265807 LOC107756568 other downstream 29086 8668814 ~ 8669797 (+)
LOC113534874 LOC108276751 other downstream 617215 9256943 ~ 9264111 (+)
G266161 NA other downstream 696073 9335801 ~ 9336290 (+)
LOC113543674 NA other downstream 779937 9419665 ~ 9424855 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other downstream 1064632 9704360 ~ 9762697 (+)

Expression


Co-expression Network