G265802


Basic Information

Item Value
gene id G265802
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 8656698 ~ 8657086 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU314943
TCTGCCTTTAGGTTTTTTCTTCAGTCCACCTCTCCACTCAATTAAATATACAGATGTGTCATCCAGTCCGTCTAAGAaatcattataatcattatatcattataaatcattattagcAGTTTTTTATGTGTGACGTTGGAACAGTGCTCCAACTTTCATTATCCGTTTCTTCTTTCTACTCGACAAGGCCCAACGTGTTCATCATCCGTTGGTCTCTCTCCTGAATGCGCGTAATTTGGCAGTCTTTTGATTACGTTTGAATTTTGGCGCGAATAATAAAGATGCCTATTAGGCAATGATGCAACACtaggtattgagggtggaacgCATCCTAAATGCATTGCCTGAAATGCAGACTGAATGTGTTTCTatcattctgtatttttttg

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04512 ECM-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU314943 True 389 lncRNA 0.38 1 8656698 8657086

Neighbor

gene id symbol gene type direction distance location
LOC113544932 NA coding upstream 380375 8275047 ~ 8276323 (+)
LOC117595648 NA coding upstream 439430 8200080 ~ 8217268 (+)
cetn3 cetn3,LOC107589032,LOC107602084,LOC107758597,LOC107658563,LOC107689496 coding upstream 712570 7937228 ~ 7944128 (+)
scarb1 scarb1 coding upstream 746443 7890041 ~ 7910255 (+)
ubc ubb,ubc,LOC107553588,LOC100190459,LOC100194618,LOC105015226,LOC107658630 coding upstream 792555 7860866 ~ 7864143 (+)
rnft1 rnft1 coding downstream 58343 8715429 ~ 8731985 (+)
si:ch211-244c8.4 LOC108277057 coding downstream 415343 9072429 ~ 9076274 (+)
zdhhc20a zdhhc20a,LOC108276908,LOC107743391,LOC108411113,LOC107697429,LOC107589301 coding downstream 478074 9135160 ~ 9151699 (+)
smyd4 smyd4 coding downstream 559694 9216780 ~ 9252133 (+)
uspl1 uspl1 coding downstream 708261 9365347 ~ 9400306 (+)
G265801 NA non-coding upstream 5331 8651021 ~ 8651367 (+)
G265797 NA non-coding upstream 10497 8643557 ~ 8646201 (+)
LOC113523758 NA non-coding upstream 13216 8549858 ~ 8643482 (+)
G265699 NA non-coding upstream 16105 8640274 ~ 8640593 (+)
G265655 NA non-coding upstream 205285 8451189 ~ 8451413 (+)
G265809 NA non-coding downstream 7696 8664782 ~ 8665655 (+)
G265808 NA non-coding downstream 10536 8667622 ~ 8668664 (+)
G265810 NA non-coding downstream 21040 8678126 ~ 8681571 (+)
G265823 NA non-coding downstream 30747 8687833 ~ 8689686 (+)
LOC113523760 NA non-coding downstream 33951 8691037 ~ 8693401 (+)
G265696 NA other upstream 16970 8633635 ~ 8639728 (+)
LOC113544929 NA other upstream 302857 8329705 ~ 8353841 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other upstream 469087 8175514 ~ 8187611 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other upstream 1530452 7116051 ~ 7126246 (+)
G264948 NA other upstream 1574257 7066871 ~ 7082441 (+)
G265807 LOC107756568 other downstream 11728 8668814 ~ 8669797 (+)
LOC113534874 LOC108276751 other downstream 599857 9256943 ~ 9264111 (+)
G266161 NA other downstream 678715 9335801 ~ 9336290 (+)
LOC113543674 NA other downstream 762579 9419665 ~ 9424855 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other downstream 1047274 9704360 ~ 9762697 (+)

Expression


Co-expression Network