G265807 (LOC107756568)


Basic Information

Item Value
gene id G265807
gene name LOC107756568
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 8668814 ~ 8669797 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU314948
taGACAATATACTTTTGCTTTCAATGAAGCTTCACATAAAATCATGCCTTAATGTCTTAAAGCTTTTACTGAGCAAGCCAAAGTCctgtggcaagaaaaaaagtctataaaaactcaataaaatgtttaaaagctcTAAAATGTAAAGCATTTTGAATCACTCTTTTTAAAttgatgctaaataaataagcttCCCTTGCCTATTCTAAATATACTGGTGTCAGTTTAATGCAAGAGAGAACTTTATTTATTGtagatatttaatttatattccaCTGCAGGTATATGAATGAACATCTTGGGGGTGAGGTTTATGTCGTATACAGTTGTGAGTTTCTGCTCAATGTCGGTAGAACCACATTGTTAGAGTTAAACTCCGCACATGCCGAAGAGCTGCGTGACCTTGGTCTGCTCCGGAGGTCTATTCCATCACCGACCCCCACTCCTGCATCTCGCCCACAGTGGATGCGCCACAAGCGGCgtgagaggaagcagaagagGGGTAAGCACAGAGGTATCCGGGCTAGGCTAGCGGCTAACCCACACAAGCCAGCGATCCCCACCATCGTACTGGCCAACTTACGCTCTTTGGAAAATAAACTGGACTACATCTGTTTACTGCGCTCCACTCAGAGGATTGTAAGAGACTGTTGTGTCTTTGTATTCACGGAAACAAAGCTCAGCAACATCGTCATCATTGGTGCCAGGACGCTGTTGTGGTCTGCAGACACTGCTCACCCCTGGCGGAGTTCATGATTATTATGTGCCGTCCGTTCTATTTACCGAGGGAATATACAGCCATACTGCTCGTTGCTGTATACATCCCTCCCAGCTCCAGTAACAACAACAGGAGTGAGACACTGATGTGCTAGTATAGTTCATTCAATGAGCAGCAGACAGTCCATCCTGATGCATTTCTCTTCTTGGCTGGGGATTTCAACCATTCAGACCTAAAGAGTGTGTTTCCTAAAATATatgcaattc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU314948 True 984 TUCP 0.43 1 8668814 8669797

Neighbor

gene id symbol gene type direction distance location
LOC113544932 NA coding upstream 392491 8275047 ~ 8276323 (+)
LOC117595648 NA coding upstream 451546 8200080 ~ 8217268 (+)
cetn3 cetn3,LOC107589032,LOC107602084,LOC107758597,LOC107658563,LOC107689496 coding upstream 724686 7937228 ~ 7944128 (+)
scarb1 scarb1 coding upstream 758559 7890041 ~ 7910255 (+)
ubc ubb,ubc,LOC107553588,LOC100190459,LOC100194618,LOC105015226,LOC107658630 coding upstream 804671 7860866 ~ 7864143 (+)
rnft1 rnft1 coding downstream 45632 8715429 ~ 8731985 (+)
si:ch211-244c8.4 LOC108277057 coding downstream 402632 9072429 ~ 9076274 (+)
zdhhc20a zdhhc20a,LOC108276908,LOC107743391,LOC108411113,LOC107697429,LOC107589301 coding downstream 465363 9135160 ~ 9151699 (+)
smyd4 smyd4 coding downstream 546983 9216780 ~ 9252133 (+)
uspl1 uspl1 coding downstream 695550 9365347 ~ 9400306 (+)
G265808 NA non-coding upstream 150 8667622 ~ 8668664 (+)
G265809 NA non-coding upstream 3159 8664782 ~ 8665655 (+)
G265802 NA non-coding upstream 11728 8656698 ~ 8657086 (+)
G265801 NA non-coding upstream 17447 8651021 ~ 8651367 (+)
G265797 NA non-coding upstream 22613 8643557 ~ 8646201 (+)
G265810 NA non-coding downstream 8329 8678126 ~ 8681571 (+)
G265823 NA non-coding downstream 18036 8687833 ~ 8689686 (+)
LOC113523760 NA non-coding downstream 21240 8691037 ~ 8693401 (+)
G265884 NA non-coding downstream 151679 8821476 ~ 8821683 (+)
G265904 NA non-coding downstream 201317 8871114 ~ 8871704 (+)
G265696 NA other upstream 29086 8633635 ~ 8639728 (+)
LOC113544929 NA other upstream 314973 8329705 ~ 8353841 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other upstream 481203 8175514 ~ 8187611 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other upstream 1542568 7116051 ~ 7126246 (+)
G264948 NA other upstream 1586373 7066871 ~ 7082441 (+)
LOC113534874 LOC108276751 other downstream 587146 9256943 ~ 9264111 (+)
G266161 NA other downstream 666004 9335801 ~ 9336290 (+)
LOC113543674 NA other downstream 749868 9419665 ~ 9424855 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other downstream 1034563 9704360 ~ 9762697 (+)
G266868 LOC108276566 other downstream 1899231 10569028 ~ 10570705 (+)

Expression


Co-expression Network