G265820


Basic Information

Item Value
gene id G265820
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 8661139 ~ 8661498 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU314961
TGGGATTGATGTCTATAGCTGGTTTGGGGCAACTGAAGACCAGGTCCAGGACATTTCCTCCCTTATGGAAGGGCAGCTGTTGAATATCAGAGAGAAGGAGtgcagaagagagagaaggcaaGAGGATTGGAGCTTGTTGGAAGGGAGGATGGAAGGTCTCTGTGGAAAGTGAGAGGGGTGCTGTCAGCAGGGAAAAGAATGTGGACCATATAGTGAAGCTTCATTAAACATACAGGTGTTATCCTTCAACTGACTTTCAACTGCCAACTCTCTTCTGACTCTCCTCTAAAAAACCGTCCTGTGCCTGTGAGCTaagaattcaattcagttttatttgtttaacaatggacattgtcacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU314961 True 360 lncRNA 0.45 1 8661139 8661498

Neighbor

gene id symbol gene type direction distance location
stc1l LOC108276574 coding downstream 260644 8395399 ~ 8400495 (-)
wdr45 wdr45,LOC107658559,LOC107689948 coding downstream 290376 8360212 ~ 8370763 (-)
zcchc9 zcchc9,LOC107602074 coding downstream 361328 8282448 ~ 8299811 (-)
atg10 NA coding downstream 392934 8196078 ~ 8268205 (-)
xrcc4 xrcc4 coding downstream 483841 8095148 ~ 8177298 (-)
ints2 ints2,LOC107744627,LOC107699256 coding upstream 72979 8734477 ~ 8815070 (-)
LOC113523741 LOC108276578 coding upstream 296486 8957984 ~ 8969296 (-)
gabrr3a NA coding upstream 325635 8987133 ~ 9003101 (-)
ptrh2 ptrh2,LOC107744620,LOC107699263,LOC107548881 coding upstream 397887 9059385 ~ 9060621 (-)
phldb2a LOC108277056 coding upstream 421360 9082858 ~ 9112980 (-)
G265795 NA non-coding downstream 29137 8631526 ~ 8632002 (-)
G265685 NA non-coding downstream 235478 8425462 ~ 8425661 (-)
G265667 NA non-coding downstream 352527 8308145 ~ 8308612 (-)
G265665 NA non-coding downstream 354873 8306039 ~ 8306266 (-)
G265602 NA non-coding downstream 465528 8194854 ~ 8195611 (-)
G265821 NA non-coding upstream 273 8661771 ~ 8661975 (-)
G265814 NA non-coding upstream 14405 8675903 ~ 8676490 (-)
LOC113525763 NA non-coding upstream 26644 8688142 ~ 8690931 (-)
G265881 NA non-coding upstream 154021 8815519 ~ 8815725 (-)
LOC117599323 NA non-coding upstream 165121 8826619 ~ 8839088 (-)
LOC113544794 cnnm3 other downstream 1193354 7451113 ~ 7467785 (-)
hic2 hic2,LOC107548988,LOC107665789,LOC107602240,LOC107704150 other downstream 1400353 7249703 ~ 7260786 (-)
G265153 NA other downstream 1412065 7248153 ~ 7249074 (-)
ttc28 ttc28,LOC107705044,LOC107602249,LOC107588927 other downstream 1617027 6835747 ~ 7044112 (-)
LOC113544902 LOC108276927,LOC108425189,LOC107706776,LOC107554527 other downstream 2385375 6253939 ~ 6275764 (-)
stard13a stard13,LOC108415386 other upstream 1276084 9937582 ~ 10003524 (-)
trim47 trim47,LOC108276926,LOC108423837,LOC107701143,LOC107718738,LOC107557227 other upstream 1890109 10551607 ~ 10564363 (-)
ufm1 ufm1 other upstream 2001907 10663405 ~ 10674681 (-)
G266904 NA other upstream 2075732 10737230 ~ 10738147 (-)
G267231 emsy other upstream 2701585 11363083 ~ 11366345 (-)

Expression


Co-expression Network