G265928


Basic Information

Item Value
gene id G265928
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 8912979 ~ 8925501 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU315089
CGGAAGACCAATGAGGACGATAAATTGGTGACTTCCTGTTTTCGAAttgttttgccgggagtttcttgcctgcatcGGCGTCttaaactatactgtttctttcttttttatcaataattttgcgctatcgttttcatctgttgtatttttcatgttatttttttttctctcgaagagcgcttttgtattttgtcacgacagcgagcggaggccatccacaccggatccacgccgtctaaaataatatcaacaaatcttcgactaagGAGCTGCGGGAGGATTGCCAAGGAAGtgtggtgctggagcagttACCAGAGGACGGAGGAGTCGCTGCCATCTAcctgaaaaggggaggagtcgCTGCCGTCCACCTGAAAGAAGAGGAGTAACTGTCTGCTGCCTGGAAAGGGGAGGAGCGGCTGCCATCCGCCAAAAAAAAGGAGAAGTGACTGCCATCCACCTGGGGACATAGGACCTGCTGCCATCCGCCAGAGGTGTGGCTGCCGTCCGCCTGAACAGGGGAGGAGCTGTAGCCACCACCAGGAGGTCCTGCGCCAGCGCCCGGTGTCGTGGGGATCGCTTCCCAGCTGGCAGAGGACCAGGGACCGGGGAACCAcgtttcttttctctctctctctctctctcttactgtctctgtTGCtcgctccttctctctcccctcttcctcctctcttcgGCAAAGgatgtattattttatgttattaggtaattgttttatgttatgtttgtaACTTTTACAATTAGACGTTACATTTAAGTTCACAGGCTTCCCATCTCCTCCTTCCCATCTCCTCCCCCATCCTTGAGATTTGTTACACCATGTTTTTACTCATGGAATACCACAGACTGTATTACCATACCAGGCCTTTTATTCTGTGGTAATCACTGAGGGACATTTGCATTGTACTAGTCTGTTCCTCCACACTGGTCCTGGTGCCACATGCCTTATAAGAATGAGTGGTTTCCAGGGTCTTTAAATGAAAGTTTGATTATTAGTGACATATTTCAGAGTGATCAGTTTATTGGTGTGTCTGTACAACTCAGCTGTGAGCGGAAAACTCTATGCATCATTCAAGAATGTGTACCTCACATCAATGGCTAAAAAGGGAGGCAGTTGGAAGGAAGTTGGCAAATGGATGAAGAGTGTTTTAGCATGTAGGGATTGGATAGATGAGAATGCCTTTAGTTTTTCACCATTTTTGCAAACAAAGCATGTTCCTAACTTTTAAACACCACAGATATAAGATCTggacaggatgtgtgtgtggcgtCTGATGCCTCAGCAGTAGAAACTGCCTGTTTAGACAGAATCCCAACCACGATATAGAACGTTTTCCTTTTCCTGGTGATTATGTCCCCCTTCTGTTTGAGTGTTTGAAAGAAGTAAGAAAGTTAGTTTAATCTGTGTATCCTCACATCCAATAGGATGTTGATTTCTTTgtgctttaataaatgaataagaataataacaaaatgaataattactgtgcaaaagtctttgacatatgcaaagaaatgctgtagagcaaagataccttgaaaaataatgaaactaaatgttactaaattaaaaaaatactgtaaagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU315089 True 1609 lncRNA 0.44 2 8912979 8925501

Neighbor

gene id symbol gene type direction distance location
rnft1 rnft1 coding upstream 180994 8715429 ~ 8731985 (+)
LOC113544932 NA coding upstream 636656 8275047 ~ 8276323 (+)
LOC117595648 NA coding upstream 695711 8200080 ~ 8217268 (+)
cetn3 cetn3,LOC107589032,LOC107602084,LOC107758597,LOC107658563,LOC107689496 coding upstream 968851 7937228 ~ 7944128 (+)
scarb1 scarb1 coding upstream 1002724 7890041 ~ 7910255 (+)
si:ch211-244c8.4 LOC108277057 coding downstream 146928 9072429 ~ 9076274 (+)
zdhhc20a zdhhc20a,LOC108276908,LOC107743391,LOC108411113,LOC107697429,LOC107589301 coding downstream 209659 9135160 ~ 9151699 (+)
smyd4 smyd4 coding downstream 291279 9216780 ~ 9252133 (+)
uspl1 uspl1 coding downstream 439846 9365347 ~ 9400306 (+)
alox5ap alox5ap coding downstream 508319 9433820 ~ 9441067 (+)
G265910 NA non-coding upstream 31926 8880519 ~ 8881053 (+)
G265906 NA non-coding upstream 33558 8879201 ~ 8879421 (+)
G265904 NA non-coding upstream 41275 8871114 ~ 8871704 (+)
G265884 NA non-coding upstream 91296 8821476 ~ 8821683 (+)
LOC113523760 NA non-coding upstream 219578 8691037 ~ 8693401 (+)
G265981 NA non-coding downstream 47052 8972553 ~ 8973438 (+)
LOC117599333 cltc,LOC105907438,LOC107701399 non-coding downstream 116853 9042354 ~ 9044626 (+)
G266010 NA non-coding downstream 129280 9054781 ~ 9054998 (+)
G266017 ptrh2,LOC107744620,LOC107699263,LOC107548881 non-coding downstream 133894 9059395 ~ 9060691 (+)
LOC117599365 NA non-coding downstream 137081 9062582 ~ 9065301 (+)
G265807 LOC107756568 other upstream 243182 8668814 ~ 8669797 (+)
G265696 NA other upstream 273251 8633635 ~ 8639728 (+)
LOC113544929 NA other upstream 559138 8329705 ~ 8353841 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other upstream 725368 8175514 ~ 8187611 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other upstream 1786733 7116051 ~ 7126246 (+)
LOC113534874 LOC108276751 other downstream 331442 9256943 ~ 9264111 (+)
G266161 NA other downstream 410300 9335801 ~ 9336290 (+)
LOC113543674 NA other downstream 494164 9419665 ~ 9424855 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other downstream 778859 9704360 ~ 9762697 (+)
G266868 LOC108276566 other downstream 1643527 10569028 ~ 10570705 (+)

Expression


Co-expression Network