G266036


Basic Information

Item Value
gene id G266036
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 9158414 ~ 9159810 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU315209
GTGGTTAAAGGTGTGGATTGGCTGCCCATATATGATAAAGAAGAAACTATGTTCAAGAACACTGAGCCCACCAAACTGAAATATCAGGTCACATGAAACTTCCTCACGCTATTGTTGGTGCTGCAAAACTCCACATTCTAAGGCAAACCACACTGTTTTTGTGACAGAGGCAAAAGTCATGTtacatcatggaacatttttacaatacaactactaaaaaaacaaaagtcatCCACAACTATTTACATGGCAAAATTATCATAAGCCTGTGGCTATCAAGTTAAAACATACTCATAAATAGTGTAATTAGCTGAGCATTTACAGTTTATTGTGATTTACTGCCAAACATAAGATAATGTTTAAGTGTTAAATTTTTGGATTGGACTGTTttggttgtgtgtgtctgtggaaaaAACAAGCTTAAAgcaaagtgaagaaaaaaaaaaaaaaaaaaagagtcactAATGTCTTTAAGGCCTTGCAGGCTGCAGAACAGGAACAAAAGATGACAGAAACAAAACgtctcatgtctctctctgccctGAACCAATCACATCACCCCAAAGTGGATCTTAACAATGGCTGTCAGTGGAGGACCAAAGTGATTACATCCAGGAAGATTTCCACTGATGGGGTCTGGTTTTACAGATCTCTTTCCCACCCCTCCTAATTAGAGCTACTTAATGTTCAATATTGATAGCTTACACGTATACTCTAGCAATTTTTTGTCCCACACACTTGCTCTTGCTTgctcgctcactcactctcttgcgctctctctgtctctctctctctctcacacacacacacacacacacacacacattccctgtACCTTACATGCACAGGACCCTGGTCAGCTCAGTCTGTCTCACCATCTCAAACACTTTCCTGCTACTCTTTATGCATTGTTATTAAGAGGATAAAGAAACTCATCTCCGTGAAAATGAATTCATTCctcattctttgctttttttgttagTGACAAAAAAGCTTTGCTGATTTCCTCTCTCACAAACATACTCCCTCTTTCGCTGCCTCTGTGCCACATTCTTGCTCTCCACTCTGTTGCAGTGGAGGATGAGCATTGTTTTTACATCAGGAAGTCTGTACCCTTAGTTCAGCCCACTTTAGCCCAGCTCAGGAAGGCAGGGATGTCTCGAACTGGGACATTACGGGTTAGAGCTTTCACACGCAGATTACGGTCATCGGTTAGCAAAACCACTTCCCTGTGCAGGCGAACTGGCCCATCTGACagaaaatataatcatttttacacgtcaacacagaaaaaaaaatttcatacaCTTctctaaaacaaaacacaagcagAAAACACAGCAACATCCTTTCTGAAATCCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU315209 True 1363 lncRNA 0.40 2 9158414 9159810

Neighbor

gene id symbol gene type direction distance location
zdhhc20a zdhhc20a,LOC108276908,LOC107743391,LOC108411113,LOC107697429,LOC107589301 coding upstream 6715 9135160 ~ 9151699 (+)
si:ch211-244c8.4 LOC108277057 coding upstream 82140 9072429 ~ 9076274 (+)
rnft1 rnft1 coding upstream 426429 8715429 ~ 8731985 (+)
LOC113544932 NA coding upstream 882091 8275047 ~ 8276323 (+)
LOC117595648 NA coding upstream 941146 8200080 ~ 8217268 (+)
smyd4 smyd4 coding downstream 56970 9216780 ~ 9252133 (+)
uspl1 uspl1 coding downstream 205537 9365347 ~ 9400306 (+)
alox5ap alox5ap coding downstream 274010 9433820 ~ 9441067 (+)
rhbdd2 rhbdd2 coding downstream 327684 9487494 ~ 9490224 (+)
prr11 NA coding downstream 346302 9506112 ~ 9513848 (+)
LOC117599365 NA non-coding upstream 93113 9062582 ~ 9065301 (+)
G266017 ptrh2,LOC107744620,LOC107699263,LOC107548881 non-coding upstream 97723 9059395 ~ 9060691 (+)
G266010 NA non-coding upstream 103416 9054781 ~ 9054998 (+)
LOC117599333 cltc,LOC105907438,LOC107701399 non-coding upstream 113788 9042354 ~ 9044626 (+)
G265981 NA non-coding upstream 184976 8972553 ~ 8973438 (+)
LOC113535228 NA non-coding downstream 50021 9209831 ~ 9214447 (+)
G266162 NA non-coding downstream 176894 9336704 ~ 9337088 (+)
G266160 NA non-coding downstream 241478 9401288 ~ 9401816 (+)
G266159 NA non-coding downstream 242121 9401931 ~ 9402718 (+)
G266184 NA non-coding downstream 287195 9447005 ~ 9447268 (+)
G265807 LOC107756568 other upstream 488617 8668814 ~ 8669797 (+)
G265696 NA other upstream 518686 8633635 ~ 8639728 (+)
LOC113544929 NA other upstream 804573 8329705 ~ 8353841 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other upstream 970803 8175514 ~ 8187611 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other upstream 2032168 7116051 ~ 7126246 (+)
LOC113534874 LOC108276751 other downstream 97133 9256943 ~ 9264111 (+)
G266161 NA other downstream 175991 9335801 ~ 9336290 (+)
LOC113543674 NA other downstream 259855 9419665 ~ 9424855 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other downstream 544550 9704360 ~ 9762697 (+)
G266868 LOC108276566 other downstream 1409218 10569028 ~ 10570705 (+)

Expression


Co-expression Network