G266160


Basic Information

Item Value
gene id G266160
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 9401288 ~ 9401816 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU315387
actgggatctcctgggattttcacatgcaacagtctctagagtttacacagaatggtgcaaaaaacactgagtgagcaacagttctgtgggtagaaacgccttgttgatgagagaggtcataaaaaatggccagattggttcgagctgccaggagggatatagtaactcatataatcactctttacaactgtggtgagcagaaaagcatctcaacatgcacaGAACATagaaccttgaagtggatgggctacaacagcagaacaacATATCAGGttgcactcctgtcagccaaaaaccgGACCCTGTGGCCACCATGGGCataggctcacccaaactggacagttgtagattaggaaaaaaaaaaaaaaaaaaaagtcacctggTCTgtccagtctggtcattctcctctgttctctctcatcagcaaggtgtttcagcctgaaGACCTTCTgctctggatgttttttgttttttgcacaattctgtcTTAACTCTAGAGacttagagtgtgtgtgtgtgtgtgtgtgt
>TU315388
actgggatctcctgggattttcacatgcaacagtctctagagtttacacagaatggtgcaaaaaacactgagtgagcaacagttctgtgggtagaaacgccttgttgatgagagaggtcataaaaaatggccagattggttcgagctgccaggagggatatagtaactcatataatcactctttacaactgtggtgagcagaaaagcatctcaacatgcacaGAACATagaaccttgaagtggatgggctacaacagcagaacaacATATCAGGttgcactcctgtcagccaaaaaccgGACCCTGTGGCCACCATGGGCataggctcacccaaactggacagttgtagattaggaaaaaaaaaaaaaaaaaaaagtcacctggTCTgtccagtctggtcattctcctctgttctctctcatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU315387 True 529 lncRNA 0.44 1 9401288 9401816
TU315388 False 423 lncRNA 0.44 1 9401288 9401710

Neighbor

gene id symbol gene type direction distance location
uspl1 uspl1 coding upstream 982 9365347 ~ 9400306 (+)
smyd4 smyd4 coding upstream 149155 9216780 ~ 9252133 (+)
zdhhc20a zdhhc20a,LOC108276908,LOC107743391,LOC108411113,LOC107697429,LOC107589301 coding upstream 249589 9135160 ~ 9151699 (+)
si:ch211-244c8.4 LOC108277057 coding upstream 325014 9072429 ~ 9076274 (+)
rnft1 rnft1 coding upstream 669303 8715429 ~ 8731985 (+)
alox5ap alox5ap coding downstream 32004 9433820 ~ 9441067 (+)
rhbdd2 rhbdd2 coding downstream 85678 9487494 ~ 9490224 (+)
prr11 NA coding downstream 104296 9506112 ~ 9513848 (+)
smg8 smg8,LOC107686170,LOC107589184,LOC107743383 coding downstream 114372 9516188 ~ 9523815 (+)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 coding downstream 122567 9524383 ~ 9536080 (+)
G266162 NA non-coding upstream 64200 9336704 ~ 9337088 (+)
LOC113535228 NA non-coding upstream 186841 9209831 ~ 9214447 (+)
G266036 NA non-coding upstream 241478 9158414 ~ 9159810 (+)
LOC117599365 NA non-coding upstream 335987 9062582 ~ 9065301 (+)
G266017 ptrh2,LOC107744620,LOC107699263,LOC107548881 non-coding upstream 340597 9059395 ~ 9060691 (+)
G266159 NA non-coding downstream 115 9401931 ~ 9402718 (+)
G266184 NA non-coding downstream 45189 9447005 ~ 9447268 (+)
G266185 NA non-coding downstream 46256 9448072 ~ 9448341 (+)
G266260 NA non-coding downstream 94422 9496238 ~ 9496886 (+)
G266279 NA non-coding downstream 129553 9531369 ~ 9531778 (+)
G266161 NA other upstream 64998 9335801 ~ 9336290 (+)
LOC113534874 LOC108276751 other upstream 137177 9256943 ~ 9264111 (+)
G265807 LOC107756568 other upstream 731491 8668814 ~ 8669797 (+)
G265696 NA other upstream 761560 8633635 ~ 8639728 (+)
LOC113544929 NA other upstream 1047447 8329705 ~ 8353841 (+)
LOC113543674 NA other downstream 17849 9419665 ~ 9424855 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other downstream 302544 9704360 ~ 9762697 (+)
G266868 LOC108276566 other downstream 1167212 10569028 ~ 10570705 (+)
scaf4a scaf4,LOC107555128 other downstream 1463796 10865612 ~ 10882265 (+)
vps36 vps36,LOC107701118 other downstream 5360497 14762313 ~ 14771073 (+)

Expression


Co-expression Network