Gene
RNA
| Item | Value |
|---|---|
| gene id | G266260 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 9496238 ~ 9496886 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU315494 | True | 615 | lncRNA | 0.30 | 2 | 9496238 | 9496886 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| rhbdd2 | rhbdd2 | coding | upstream | 6014 | 9487494 ~ 9490224 (+) |
| alox5ap | alox5ap | coding | upstream | 55171 | 9433820 ~ 9441067 (+) |
| uspl1 | uspl1 | coding | upstream | 95932 | 9365347 ~ 9400306 (+) |
| smyd4 | smyd4 | coding | upstream | 244105 | 9216780 ~ 9252133 (+) |
| zdhhc20a | zdhhc20a,LOC108276908,LOC107743391,LOC108411113,LOC107697429,LOC107589301 | coding | upstream | 344539 | 9135160 ~ 9151699 (+) |
| prr11 | NA | coding | downstream | 9226 | 9506112 ~ 9513848 (+) |
| smg8 | smg8,LOC107686170,LOC107589184,LOC107743383 | coding | downstream | 19302 | 9516188 ~ 9523815 (+) |
| ypel2a | LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 | coding | downstream | 27497 | 9524383 ~ 9536080 (+) |
| pom121 | pom121c | coding | downstream | 45597 | 9542483 ~ 9555589 (+) |
| ripk4 | ripk4 | coding | downstream | 71889 | 9568775 ~ 9580508 (+) |
| G266185 | NA | non-coding | upstream | 47897 | 9448072 ~ 9448341 (+) |
| G266184 | NA | non-coding | upstream | 48970 | 9447005 ~ 9447268 (+) |
| G266159 | NA | non-coding | upstream | 93520 | 9401931 ~ 9402718 (+) |
| G266160 | NA | non-coding | upstream | 94422 | 9401288 ~ 9401816 (+) |
| G266162 | NA | non-coding | upstream | 159150 | 9336704 ~ 9337088 (+) |
| G266279 | NA | non-coding | downstream | 34483 | 9531369 ~ 9531778 (+) |
| G266282 | NA | non-coding | downstream | 42196 | 9539082 ~ 9539299 (+) |
| G266277 | NA | non-coding | downstream | 79701 | 9576587 ~ 9580828 (+) |
| G266323 | NA | non-coding | downstream | 91992 | 9588878 ~ 9589123 (+) |
| G266416 | NA | non-coding | downstream | 267755 | 9764641 ~ 9766495 (+) |
| LOC113543674 | NA | other | upstream | 71383 | 9419665 ~ 9424855 (+) |
| G266161 | NA | other | upstream | 159948 | 9335801 ~ 9336290 (+) |
| LOC113534874 | LOC108276751 | other | upstream | 232127 | 9256943 ~ 9264111 (+) |
| G265807 | LOC107756568 | other | upstream | 826441 | 8668814 ~ 8669797 (+) |
| G265696 | NA | other | upstream | 856510 | 8633635 ~ 8639728 (+) |
| dclk1a | dclk1,LOC107728871,LOC107577778 | other | downstream | 207474 | 9704360 ~ 9762697 (+) |
| G266868 | LOC108276566 | other | downstream | 1072142 | 10569028 ~ 10570705 (+) |
| scaf4a | scaf4,LOC107555128 | other | downstream | 1368726 | 10865612 ~ 10882265 (+) |
| vps36 | vps36,LOC107701118 | other | downstream | 5265427 | 14762313 ~ 14771073 (+) |
| trnar-ccu_11 | NA | other | downstream | 7590782 | 17087668 ~ 17087740 (+) |
