Gene
RNA
| Item | Value |
|---|---|
| gene id | G266499 |
| gene name | stard13,LOC107691680 |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 9944113 ~ 9945579 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| stard13 | Predicted to enable GTPase activator activity. Acts upstream of or within endothelial cell migration; endothelial tube lumen extension; and negative regulation of cell migration involved in sprouting angiogenesis. Predicted to be located in cytosol. |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU315784 | True | 455 | lncRNA | 0.55 | 2 | 9944113 | 9945579 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ccdc169 | NA | coding | upstream | 244795 | 9690378 ~ 9699318 (+) |
| sparta | spg20 | coding | upstream | 257120 | 9674854 ~ 9686993 (+) |
| ccna1 | ccna1 | coding | upstream | 272275 | 9669215 ~ 9671838 (+) |
| smad9 | smad9 | coding | upstream | 292982 | 9640731 ~ 9651131 (+) |
| alg5 | alg5,LOC102793295 | coding | upstream | 304967 | 9630385 ~ 9639146 (+) |
| rfc3 | rfc3,LOC107589808,LOC107728889 | coding | downstream | 69228 | 10014807 ~ 10019753 (+) |
| zar1l | zar1l | coding | downstream | 93830 | 10039409 ~ 10041796 (+) |
| hunk | hunk,LOC108423838,LOC107691675,LOC107577711,LOC107734458,LOC104954747 | coding | downstream | 287127 | 10232706 ~ 10241765 (+) |
| eva1c | eva1c | coding | downstream | 309996 | 10255575 ~ 10268750 (+) |
| slc46a3 | slc46a3 | coding | downstream | 356994 | 10302573 ~ 10320171 (+) |
| G266497 | NA | non-coding | upstream | 3813 | 9937395 ~ 9940300 (+) |
| G266495 | NA | non-coding | upstream | 7900 | 9935989 ~ 9936213 (+) |
| G266416 | NA | non-coding | upstream | 177618 | 9764641 ~ 9766495 (+) |
| G266323 | NA | non-coding | upstream | 354990 | 9588878 ~ 9589123 (+) |
| G266277 | NA | non-coding | upstream | 363285 | 9576587 ~ 9580828 (+) |
| G266580 | NA | non-coding | downstream | 57567 | 10003146 ~ 10003361 (+) |
| G266802 | NA | non-coding | downstream | 601242 | 10546821 ~ 10547182 (+) |
| G266869 | NA | non-coding | downstream | 626312 | 10571891 ~ 10572147 (+) |
| G266871 | frem2a,LOC108276566,LOC107701139,LOC107555183,LOC107693873,LOC107718779,LOC107720635 | non-coding | downstream | 635280 | 10580859 ~ 10581182 (+) |
| G266892 | NA | non-coding | downstream | 721239 | 10666818 ~ 10668314 (+) |
| dclk1a | dclk1,LOC107728871,LOC107577778 | other | upstream | 181416 | 9704360 ~ 9762697 (+) |
| LOC113543674 | NA | other | upstream | 519258 | 9419665 ~ 9424855 (+) |
| G266161 | NA | other | upstream | 607823 | 9335801 ~ 9336290 (+) |
| LOC113534874 | LOC108276751 | other | upstream | 680002 | 9256943 ~ 9264111 (+) |
| G265807 | LOC107756568 | other | upstream | 1274316 | 8668814 ~ 8669797 (+) |
| G266868 | LOC108276566 | other | downstream | 623449 | 10569028 ~ 10570705 (+) |
| scaf4a | scaf4,LOC107555128 | other | downstream | 920033 | 10865612 ~ 10882265 (+) |
| vps36 | vps36,LOC107701118 | other | downstream | 4816734 | 14762313 ~ 14771073 (+) |
| trnar-ccu_11 | NA | other | downstream | 7142089 | 17087668 ~ 17087740 (+) |
| trnam-cau_40 | NA | other | downstream | 7142169 | 17087748 ~ 17087819 (+) |
