G266580


Basic Information

Item Value
gene id G266580
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 10003146 ~ 10003361 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU315885
CACAATGTAAGTAAAGAAGCACAGCAGTGATTTCAGCCTACCTCACAGCGCCCCAGATGAGACCTGTTCCCTTTACTCAAGAGGAAGGGGCATTCAACCCTGTTTGGACCTGCAGATGAGCGATGGATTTGAGCTACAGTCCCAATTACAGCTTGCCTTGGAGTTTTAGCAGCCTCTCAGGCACAAACACTGCAGTAGGCTTGAGCTGAAATCTGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU315885 True 216 lncRNA 0.50 1 10003146 10003361

Neighbor

gene id symbol gene type direction distance location
ccdc169 NA coding upstream 303828 9690378 ~ 9699318 (+)
sparta spg20 coding upstream 316153 9674854 ~ 9686993 (+)
ccna1 ccna1 coding upstream 331308 9669215 ~ 9671838 (+)
smad9 smad9 coding upstream 352015 9640731 ~ 9651131 (+)
alg5 alg5,LOC102793295 coding upstream 364000 9630385 ~ 9639146 (+)
rfc3 rfc3,LOC107589808,LOC107728889 coding downstream 11446 10014807 ~ 10019753 (+)
zar1l zar1l coding downstream 36048 10039409 ~ 10041796 (+)
hunk hunk,LOC108423838,LOC107691675,LOC107577711,LOC107734458,LOC104954747 coding downstream 229345 10232706 ~ 10241765 (+)
eva1c eva1c coding downstream 252214 10255575 ~ 10268750 (+)
slc46a3 slc46a3 coding downstream 299212 10302573 ~ 10320171 (+)
G266499 stard13,LOC107691680 non-coding upstream 57567 9944113 ~ 9945579 (+)
G266497 NA non-coding upstream 62846 9937395 ~ 9940300 (+)
G266495 NA non-coding upstream 66933 9935989 ~ 9936213 (+)
G266416 NA non-coding upstream 236651 9764641 ~ 9766495 (+)
G266323 NA non-coding upstream 414023 9588878 ~ 9589123 (+)
G266802 NA non-coding downstream 543460 10546821 ~ 10547182 (+)
G266869 NA non-coding downstream 568530 10571891 ~ 10572147 (+)
G266871 frem2a,LOC108276566,LOC107701139,LOC107555183,LOC107693873,LOC107718779,LOC107720635 non-coding downstream 577498 10580859 ~ 10581182 (+)
G266892 NA non-coding downstream 663457 10666818 ~ 10668314 (+)
G266901 NA non-coding downstream 729176 10732537 ~ 10734630 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 240449 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 578291 9419665 ~ 9424855 (+)
G266161 NA other upstream 666856 9335801 ~ 9336290 (+)
LOC113534874 LOC108276751 other upstream 739035 9256943 ~ 9264111 (+)
G265807 LOC107756568 other upstream 1333349 8668814 ~ 8669797 (+)
G266868 LOC108276566 other downstream 565667 10569028 ~ 10570705 (+)
scaf4a scaf4,LOC107555128 other downstream 862251 10865612 ~ 10882265 (+)
vps36 vps36,LOC107701118 other downstream 4758952 14762313 ~ 14771073 (+)
trnar-ccu_11 NA other downstream 7084307 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 7084387 17087748 ~ 17087819 (+)

Expression


Co-expression Network