G266868 (LOC108276566)


Basic Information

Item Value
gene id G266868
gene name LOC108276566
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 10569028 ~ 10570705 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU316249
GTGGTTTTCACTTTAATACAGGAAggcagatatgaagcttgcagacTTGCAAGTAAAGCTTTTATACTTTTCAAATATATAGCACACTGTACTTCCTcaatttatattacaaataGGACACAGCACAATTCACCAACATTTTccatatttatgaaatattgaaGCAGTATGCTAACCAAATCATTAATTACTTGTTCTCTATTATAACGTACAATTGTGTAAAGGAAACATTATGATTacattgtttgtttattatactAAGAACCTTTCATTACGTATGACCCTGTTGTATGTGGGAACACACAGcaggaaataaataaacctgGATCAACACTCGACAATTAATCAGACGtttaatacatacagtactatTACTCCAAGTTCAGTTGTATGTGCATAAAATACATAACAAGTAATGATAATGAACACTGATGTCAAAAAGAGAAGACATAAAATATGGTACACTTcatgtaaacataaatatgtgtatgGCTCATTACACAAAGCTATGTAAACAACTCGCAGCAGACATTCAGTGTTTCTTACAGTTTGGTATTTGTGCACAATCAGCAGTTTCTCTCTACTAACATAATGTAACCACATTTTAAAGTGTATTCTGTTACTGATTATTGATCATGGAAACTGTAACTGGAAACCTAATGTAAATGACCATACAATTTTGGTGAGCTGATTTGATTCCtttacttttttcctctttatccttttcaattttctttttcttcttatcaATCCTATAACAGTTCCTATCTTCCTACTGGGCTTACCCTTAGAGtgtctgttttgtgttattCTAAATAAGTAACCCCATTTCATATCCCCAAAGTTTAATACAATTTGTCAATATTTAACAATtgtgatataaatgtaaattaatacgTAATCCTTGGTCCTTTGAAATCAAGATATACATCTTAAAAACCACAATAATTAGCATAACTTCTGAGCACGCAGTTGTGGCCAGTTCTGAAACAGTACTCGAAGAGCACAGTTAATCCAAACCACTCAGACAGATGTTTAGAATGCAGCTGGACAGACAGACCTGACGGACCTTCCACAGGACTGAATCTTTCTGAGGCACTTGTTAAATTGCAAATACAGAGCATTGTGACTCGTCCGAGATGGCCCACAATAATCAGGACTGAATCCTGCGGCTGTCACACCTCAGAGCCATCGCTGCCTTCAAAACCGCTCCTCAATATAACCGGCTGCATGCTGCCAGAGACTGTTGGTCCCTCCTTCGCTGATTTCTTTCTCACCTCCTTTTCTGGTCTCCTCTGTGAACGCAGCATTAGAAAAAGCACAGCTACGATGAGGCCGAAGAGCAGCAGCCCAATTGAGATCCCCGCTGCCAGCACTGCCTCTTCCTCAGTGCCACGTTTGGTCATTTCATGCTGTACCAGGCCTTCAGGAAGAACCTCACCAGCCTGCACTGCCTGCTGGCGCTCTAGAGCAATGTGCATGATGTTGGTGCCTCGATTGTTCTCAGCACTGATCATTTCAGCGATAGCAGGCACGTCTTGGTTAGAGCGCCTAGCACGAGTGTTGTGCGCCACGAAGGAATGGTACTCCACGCTTCTTTTGCCGATGCCACGGTTTGCATTGTCTCTGGAGCGCACAGTGTAAATGGTGTGGATGTACCACTCACGGCCTGCTGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU316249 True 1678 TUCP 0.40 1 10569028 10570705

Neighbor

gene id symbol gene type direction distance location
trim3b trim3b,LOC108276924,LOC108423836,LOC107701140,LOC107557229,LOC107720632,LOC107718737 coding upstream 14777 10520018 ~ 10554251 (+)
fhdc3 LOC108276923 coding upstream 49812 10507226 ~ 10519216 (+)
arfip2b arfip2b,LOC108276920,LOC108438961,LOC107718740,LOC107555180,LOC107701145,LOC107557232 coding upstream 63586 10485024 ~ 10505442 (+)
dchs1b LOC108277286,LOC108438972,LOC107718741,LOC107701146,LOC107555179,LOC105907404,LOC107720538,LOC107693876 coding upstream 120863 10353267 ~ 10448165 (+)
slc46a3 slc46a3 coding upstream 248857 10302573 ~ 10320171 (+)
trpc4a trpc4,LOC108423767 coding downstream 167597 10738302 ~ 10759716 (+)
postna postn coding downstream 205597 10776302 ~ 10811764 (+)
sod1 sod1 coding downstream 313571 10884276 ~ 10890564 (+)
tiam1a tiam1,LOC108423828 coding downstream 343997 10914702 ~ 10975096 (+)
grik1a grik1,grik1a,LOC107555187,LOC107701130,LOC107718733,LOC107693913 coding downstream 407389 10978094 ~ 11035327 (+)
G266802 NA non-coding upstream 21846 10546821 ~ 10547182 (+)
G266580 NA non-coding upstream 565667 10003146 ~ 10003361 (+)
G266499 stard13,LOC107691680 non-coding upstream 623449 9944113 ~ 9945579 (+)
G266497 NA non-coding upstream 628728 9937395 ~ 9940300 (+)
G266495 NA non-coding upstream 632815 9935989 ~ 9936213 (+)
G266869 NA non-coding downstream 1186 10571891 ~ 10572147 (+)
G266871 frem2a,LOC108276566,LOC107701139,LOC107555183,LOC107693873,LOC107718779,LOC107720635 non-coding downstream 10154 10580859 ~ 10581182 (+)
G266892 NA non-coding downstream 96113 10666818 ~ 10668314 (+)
G266901 NA non-coding downstream 161832 10732537 ~ 10734630 (+)
G266946 NA non-coding downstream 248821 10819526 ~ 10819739 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 806331 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 1144173 9419665 ~ 9424855 (+)
G266161 NA other upstream 1232738 9335801 ~ 9336290 (+)
LOC113534874 LOC108276751 other upstream 1304917 9256943 ~ 9264111 (+)
G265807 LOC107756568 other upstream 1899231 8668814 ~ 8669797 (+)
scaf4a scaf4,LOC107555128 other downstream 294907 10865612 ~ 10882265 (+)
vps36 vps36,LOC107701118 other downstream 4191608 14762313 ~ 14771073 (+)
trnar-ccu_11 NA other downstream 6516963 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 6517043 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 6517744 17088449 ~ 17088521 (+)

Expression


Co-expression Network