G266901


Basic Information

Item Value
gene id G266901
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 10732537 ~ 10734630 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU316286
AGCCAACTACTAAAAGgttgtttaaaatgcacagagtctaaaacagaaaacacagaaccTTTTCATTCAAACTCTAGTGCAAAAATCAGTTCATCATTTAAAACCGAGCACACAGCTTCCCCATGGCACCAAACCAGCTGAAACTGTTCCAGGTCCTTCATGCTTTTGTAAAAGTTAAAATCAACAGTGATCCTTGTTTTAACCAGTCTTTGAAAGGTTGCTGTTAcatcatgttgtgtgttctgtgccACTTTGCTTTTTCTGCTGATGTAAATGGCCATTTTTGCTTGGCCCAGAATAAAATTAATCAGCTGACACTTGAACCTTTCTTTTTTAGTGTACTTAAAACCAAGGATAAAAACCTGTGGGGTAAATACTGTGTTAAAAGACTCAAAAAGTCTCgctaaaattctaaaaaacGGACGGAGCCTAAAACAGTtcataaaagcatgaaaaaccGTTTCTCTCTGTAAACAAAAAGGACACTCATGTGTAACCTCTGGGTTTAAAATGCAGATAAAAGCGTTTACAGAGACGATGCCGTGCAGTATTCTCCACTGCAGGTCACCTGCTTTTTTAGTTAACGGTGGTTTGTACAGTGTTCGCCACTCTGGCTTTTCATCATTATTCAGCCCAAGGACACTGCGCCAGGGCGTGTCTACCCTCCTGTCCAACCATTTCTTATTCAGCACTTTAACACATAACCCATAGAAAGCCTTACCAGAGGCTGTGTTAAgggctatttttgttttttctccatcCCCGAGGAGGGGGCCTGAGACCTCTGACAGATTGGCTTCAACAGTTAAGCCTGGAGTGGGCTCACTGTCCTCAGGCCTGACCACCCCAGCGCAGTAGTCCCTGAGCTGCATGTGCTCCTCTGACGTAAGTGCAGACCTCCACCTCTGTAACAGCTGTGTGACCACACGGACAGACTTCACCCCTATCCGTGTTGCTAAGTCATTTGGGCTAGCAAAGTCCGGTCCTGTCAGTTCCATCAGCTGTCGCAGAGTCACGGTCCTTGAGGAGATCAAGGCTCTTGTTAAGGCCGGAGTAGTCCTGCTCGTTACATCCAGCCGAGCACCATGGATGAGCGGCTCATCAAGGAGCCAGCGTGGTGATGGACAGTCCTCTCTCTGCACtctaaaatggttaaaaactttaaaaagtccTTGGTAAAAAGCAGGTAATCCTGCTAAGTTTAGCTGTTTAGTGTCCATTAGAAACAGAGACTTGTCCAGACCCCATCCTCCCACGGTTTGCAGTATTCTGTTTGCCACCGCTCTCCATGAGAGGCTCTCTGGGCCGGTGAGGAGCTTCTGTACAAACTGGAGGCGAAACGCTACAGTCCTGCTGGATAAATGAATAAGTCCTTGCCCGCTCTCTTGCTTGGGTAGGTATAGCACACTCTGCGGTATCCAGTGCAGCTTGTCCCAGAAGAAGTCCACCATCATGGCTTGCAGATCCGCAAGTAGTTTTGGGGGTGGATCGATGCAGGCCAGTCTGTGCCATAACGTTGATGCAGCTAGATTATTAACAACCAAGGTTCTGCCCTTATATGACATTTGTGGAACAagccatttccatttatttaaacgtccttttattttctcacttATGCCTTCCCAGTTTTTCTCTACATAAGTACTGTCTCCCAGGTACACTCCCAAGTATTTAAAACCTCCAGTTTTCCATGTTAGACTATCTGGGAGACATGGTTCCCCACCCTTCCAATCCCCAACTAAAATGGCTTCACTTTTTTTCCAGTTCACTTTTGCAGATGATAAgacattaaaatcttttataataCCAGTTAAAATGTCaatgtctctctgtccattcacCATAACTACAACATCATCAGCGTAGGCTGATACACAGAATGGGGTATTACAGCTTGGTATCAATAGACCAGTGATTTTACTTCTTATATGACATAGTAATGGTTCTATGGCTAGGGCGTATAGCATGCCGGACAGAGAGCAGCCCTGCCTAATACCCCTACACACTTTAAAAGGTACACATAAACCACCGTTAACTTTCAGTACGCTCTCAATATCACTGTACAAAACCTGGATCATGGCCATGAAACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU316286 True 2094 lncRNA 0.44 1 10732537 10734630

Neighbor

gene id symbol gene type direction distance location
trim3b trim3b,LOC108276924,LOC108423836,LOC107701140,LOC107557229,LOC107720632,LOC107718737 coding upstream 178286 10520018 ~ 10554251 (+)
fhdc3 LOC108276923 coding upstream 213321 10507226 ~ 10519216 (+)
arfip2b arfip2b,LOC108276920,LOC108438961,LOC107718740,LOC107555180,LOC107701145,LOC107557232 coding upstream 227095 10485024 ~ 10505442 (+)
dchs1b LOC108277286,LOC108438972,LOC107718741,LOC107701146,LOC107555179,LOC105907404,LOC107720538,LOC107693876 coding upstream 284372 10353267 ~ 10448165 (+)
slc46a3 slc46a3 coding upstream 412366 10302573 ~ 10320171 (+)
trpc4a trpc4,LOC108423767 coding downstream 3672 10738302 ~ 10759716 (+)
postna postn coding downstream 41672 10776302 ~ 10811764 (+)
sod1 sod1 coding downstream 149646 10884276 ~ 10890564 (+)
tiam1a tiam1,LOC108423828 coding downstream 180072 10914702 ~ 10975096 (+)
grik1a grik1,grik1a,LOC107555187,LOC107701130,LOC107718733,LOC107693913 coding downstream 243464 10978094 ~ 11035327 (+)
G266892 NA non-coding upstream 64223 10666818 ~ 10668314 (+)
G266871 frem2a,LOC108276566,LOC107701139,LOC107555183,LOC107693873,LOC107718779,LOC107720635 non-coding upstream 151355 10580859 ~ 10581182 (+)
G266869 NA non-coding upstream 160390 10571891 ~ 10572147 (+)
G266802 NA non-coding upstream 185355 10546821 ~ 10547182 (+)
G266580 NA non-coding upstream 729176 10003146 ~ 10003361 (+)
G266946 NA non-coding downstream 84896 10819526 ~ 10819739 (+)
G267051 NA non-coding downstream 301368 11035998 ~ 11036230 (+)
G267062 NA non-coding downstream 307587 11042217 ~ 11042390 (+)
G267070 NA non-coding downstream 321982 11056612 ~ 11057021 (+)
G267090 NA non-coding downstream 351618 11086248 ~ 11087863 (+)
G266868 LOC108276566 other upstream 161832 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 969840 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 1307682 9419665 ~ 9424855 (+)
G266161 NA other upstream 1396247 9335801 ~ 9336290 (+)
LOC113534874 LOC108276751 other upstream 1468426 9256943 ~ 9264111 (+)
scaf4a scaf4,LOC107555128 other downstream 130982 10865612 ~ 10882265 (+)
vps36 vps36,LOC107701118 other downstream 4027683 14762313 ~ 14771073 (+)
trnar-ccu_11 NA other downstream 6353038 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 6353118 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 6353819 17088449 ~ 17088521 (+)

Expression


Co-expression Network