G267090


Basic Information

Item Value
gene id G267090
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 11086248 ~ 11087863 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU316518
CAATCATCAGGCATCTGGATTTTTCCTGCCTTATGATGGTAAAAAATGAggcaagttaaaaaaaaaaagtgtgtccTACATATTCAGGGCCCCTTGTATAAAAGCTGCATACTCATAAATGTTTTGATTTATGAAATAGATTTGAGTATATACATGTCCTTATGCAAACTTTAGACCATAAGTACACCGGTTCGCTGGGTTTTGTCAGGTCAGTAACTGACCCCTAATGGGTAATTTGTAATATTACTAGTATCTTTCAATATCACAatgctcatatatatatatatatatatatagttccaGCCGGTTCTAGATTGTGTGCACTCTCATTGCTTTAAAGAGGTCACTGGAGAATGAATTTGCTTATGTCAATAGATAGCACTGTGCAAAATATCTGCGATGTGCAAATGTGCCTGACTAATCTTGTGCCAAAATGCCCAGTGATAAAATTTTGTAGTTGTGCCTGATGGCTGGCTTTGTTAGGCCTGTATACTGTCAGGGCAAATTAAATCAGTGAATTGTGGCcagctttctgtttgtttgtttaatcttattttattctGATTACCCATCTAGAAGAATGCAGAATATGTGCATTTTCAGTGAATAGTTTTTGCACACCGTATATTTTAACAttgaattgagaaatgttttttattaaatgtttataccaaagcatggttgaattcttgaatctgattggtcagaaggtgtgcattatttacagctcggacagtagttccggctgtgaCATGAACAATATGTTAATATAATGCGCTcgatctaatacattattgtttctatagtaacagctcttacacagggacttgtatggtggacgtaatataatataatataagactaataataaatagatttaaaaagcATCTTGTTTaccaaagtaaaatgtataatctttgatgtgatgaagtttttttcttaggacacatttatttaacatttacggaaggggAAGTCTCAGTGTAagagctttgtaacactcacagtgctttgcaaagtttcccagcaggaAAGTCTTAAGGACAGTGGAGTTTACTCTTTCccgtttctcagtaaaatgacaagctatgtttttttgagaaacagagagagctagagaacgactgtttatcgcagctataacgtAGGTGAGAACAGGGCCTAATTTGCTtctcggatgttccacaacattaaatctaactataaaatgttaaaatgtgacgtttcattcattaataaattaaaccttGTAATCGCTGGGAAATCgctgtggtagctcagtggaataacacactccagaccatgctgttGAAAATATCGtacgaaaataatccactccGGGGGCGAGTGGGAGGTGTAgcggtgtgcattattttcatcaGGTGTTATtactgtcatgtgttattccttacttattgaaCTGAGGAATGTTagaaattactttattttatgtgGTCCATTCtagatctaatctaatctgaaaaGGGCTTTTTGATGAAAAATCTTGATCACTCTAGTTAGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU316518 True 1524 lncRNA 0.35 2 11086248 11087863

Neighbor

gene id symbol gene type direction distance location
cct8 cct8,LOC107693911 coding upstream 2639 11074655 ~ 11083609 (+)
grik1a grik1,grik1a,LOC107555187,LOC107701130,LOC107718733,LOC107693913 coding upstream 50921 10978094 ~ 11035327 (+)
tiam1a tiam1,LOC108423828 coding upstream 111152 10914702 ~ 10975096 (+)
sod1 sod1 coding upstream 195684 10884276 ~ 10890564 (+)
postna postn coding upstream 274484 10776302 ~ 10811764 (+)
LOC113543610 LOC100304491,LOC108423765 coding downstream 59732 11147595 ~ 11151753 (+)
kpna7 kpna7,LOC108277302,LOC108423764,LOC103041448,LOC107693907,LOC107720648,LOC107556882 coding downstream 64212 11152075 ~ 11155690 (+)
LOC113543473 LOC108276550 coding downstream 79274 11167137 ~ 11219048 (+)
mtnr1bb mtnr1bb,LOC108276622,LOC103030874,LOC108423763,LOC107720651,LOC107693905,LOC105890457,LOC107556861 coding downstream 146696 11234559 ~ 11245766 (+)
si:ch1073-15f19.2 LOC108277381 coding downstream 205834 11293697 ~ 11304416 (+)
G267070 NA non-coding upstream 29227 11056612 ~ 11057021 (+)
G267062 NA non-coding upstream 43858 11042217 ~ 11042390 (+)
G267051 NA non-coding upstream 50018 11035998 ~ 11036230 (+)
G266946 NA non-coding upstream 266509 10819526 ~ 10819739 (+)
G266901 NA non-coding upstream 351618 10732537 ~ 10734630 (+)
G267103 NA non-coding downstream 23523 11111386 ~ 11111597 (+)
G267257 NA non-coding downstream 344796 11432659 ~ 11432862 (+)
G267314 dyrk1a non-coding downstream 536511 11624374 ~ 11627972 (+)
G267317 NA non-coding downstream 562566 11650429 ~ 11652188 (+)
G267362 NA non-coding downstream 740706 11828569 ~ 11828818 (+)
scaf4a scaf4,LOC107555128 other upstream 203983 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 515543 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 1323551 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 1661393 9419665 ~ 9424855 (+)
G266161 NA other upstream 1749958 9335801 ~ 9336290 (+)
vps36 vps36,LOC107701118 other downstream 3674450 14762313 ~ 14771073 (+)
trnar-ccu_11 NA other downstream 5999805 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 5999885 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 6000586 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 6000666 17088529 ~ 17088600 (+)

Expression


Co-expression Network