G267317


Basic Information

Item Value
gene id G267317
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 11650429 ~ 11652188 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU316792
GATCAGGGTTTTGGTCTTAAAACAGCTCAATCAGGGTACCCACTACAACATTAGAAACcacatttcacaatattttcttcattttcatataCCATGTGATctgtaaaataacacacactcaaagtTTTTCTGTGGTATACATGACCCAAAAAATACAAACTACAAATGCCATGGACTTACAATCTTGTTGTCAAAAAACAACCTTAAATGAAAAATCCACACTGAACGACCTAgctatcaatatttataatcaatgtgattTTCAATGgtgcaaatatttattttatgattaaaacttgaattttttttggtttaaatcccTTTGAATGACAAATTGCACTGTGTTCAATTTGGTTAAAGGTTTCctacatttcccacaatgctgttcaaaCTCTCCATCTAAAGCAGGGGTGTCATACTCTCATTCTGCCTGGGCCATATCAGCCTTTTTGTAAGCCTCTGAAGGGCCATAAACTAAGGCTCTAaattttttactgtattatCATCTACCCTATTGATGAACACCAATAACCAGCTCTGAAAATAGAATACAACTTTtctgcaaaaacattttcattgaaacgaataaattaattaaatgttttgatcatatttaattaaatgtcttTTCACACGGTTTTCCTGATGTACTGGGGTGCTTGGTACACAAAGCTTTACTGAAAACTCTAATTGTTTAGTCACAAGTCTCACCTCTCTGTGGAAGCTATGGCgacactccagcacacacagGTCCTCAGGTGTCATATCATCATGACAAATAATGCAAGGGTCCTCCATGTTCAGCTGAGATACAGAAgtcagaaagaagagagagagagagagagagagagagagagagagagatttcaggGCAGTGTGCGaatacataaaaacagttgTAGCTAAAGGGGGCTGGTTGGTGGTATAAAATGCTAAAGTGCTACAAATTCGTACAGCTCTGGAAGACTTGCGATGCTGAGAGGACACGCTCTTCCACACATGTGCAGGTGGGGGAGTTGCAGAAGCTCTGGGGGGGTCACTGGGAGGAGTTGGACTTGGTACTGCTAAATCTCTCACTCCAGCCACATCTCCACTTGCAAAGTTCATCTgctccttTTGTGAGTGTTCCTGGTGGTCAAGGATGAGTTGAGCAGCTCTGTTAATCACTTCTTCATACTTCATCATACTCAGACTGCCACCGTTCATAACGCGGACCTCTTGAATAAATTTTGTCAGGACCgatctgaaaacacacataGTAGCATATACAAgtta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU316792 True 1275 lncRNA 0.39 2 11650429 11652188

Neighbor

gene id symbol gene type direction distance location
vps26c dscr3 coding upstream 1239 11641023 ~ 11649190 (+)
kcnj6 kcnj6 coding upstream 33108 11553248 ~ 11617321 (+)
erg erg coding upstream 136961 11467130 ~ 11513468 (+)
psmg1 psmg1 coding upstream 220591 11424549 ~ 11429838 (+)
klhl35 klhl35 coding upstream 250329 11392935 ~ 11400100 (+)
pigp pigp coding downstream 34127 11686315 ~ 11691822 (+)
hlcs hlcs coding downstream 44792 11696980 ~ 11723734 (+)
LOC113543498 crybg3 coding downstream 107165 11759353 ~ 11797070 (+)
cblb cblb,LOC102193754,LOC102306619 coding downstream 296598 11948786 ~ 12031535 (+)
picalma picalm,picalma,LOC107744613,LOC107699270 coding downstream 655145 12307333 ~ 12348359 (+)
G267314 dyrk1a non-coding upstream 22457 11624374 ~ 11627972 (+)
G267257 NA non-coding upstream 217567 11432659 ~ 11432862 (+)
G267103 NA non-coding upstream 538832 11111386 ~ 11111597 (+)
G267090 NA non-coding upstream 562566 11086248 ~ 11087863 (+)
G267070 NA non-coding upstream 593408 11056612 ~ 11057021 (+)
G267362 NA non-coding downstream 176381 11828569 ~ 11828818 (+)
G267381 NA non-coding downstream 211699 11863887 ~ 11868663 (+)
G267429 NA non-coding downstream 328993 11981181 ~ 12011289 (+)
G267499 NA non-coding downstream 778896 12431084 ~ 12431810 (+)
G267801 LOC107739129 non-coding downstream 869998 12522186 ~ 12522521 (+)
scaf4a scaf4,LOC107555128 other upstream 768164 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 1079724 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 1887732 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 2225574 9419665 ~ 9424855 (+)
G266161 NA other upstream 2314139 9335801 ~ 9336290 (+)
vps36 vps36,LOC107701118 other downstream 3110125 14762313 ~ 14771073 (+)
trnar-ccu_11 NA other downstream 5435480 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 5435560 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 5436261 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 5436341 17088529 ~ 17088600 (+)

Expression


Co-expression Network