G267499


Basic Information

Item Value
gene id G267499
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 12431084 ~ 12431810 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU316997
CTGGGCAAAGGCACAGCAGCGTCAGAATGGACAGCAGTGTGTCAAGTTTCTCCCAACTTCGGCTCTCCATTTCTCCGCCTGTCCTTCTTTCCTCCCTCTCCTTCTGCCTCTCTGTCCTCTGAGATAACCGCGTTATCTACAAGTCCTCTGCTTTCGGCGACACTTTGCTCCGAGTGTCTTCCTGCCAACTGCGCGCTGTTAAACAGCTCAGCTCCTGAGTGGACAGAGCGCGAGCTtggtctaaataaataaataaataaatatctgcctCCTCAGTGGAAAAGTCAACACCGAGACGACGACTCCAACAGTTGTCCACGCGCTCGGAAACAAACAGAccgtagcttttttttttaatgctgtagttttttcttcttattattattatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU316997 True 389 lncRNA 0.47 2 12431084 12431810

Neighbor

gene id symbol gene type direction distance location
fez1 fez1,LOC107691643,LOC107751387 coding upstream 38427 12379691 ~ 12392657 (+)
vps26bl v26bl,LOC108423787,LOC107588734,LOC107751386,LOC107691644,LOC105024202 coding upstream 57079 12365051 ~ 12374005 (+)
picalma picalm,picalma,LOC107744613,LOC107699270 coding upstream 82725 12307333 ~ 12348359 (+)
cblb cblb,LOC102193754,LOC102306619 coding upstream 399549 11948786 ~ 12031535 (+)
LOC113543498 crybg3 coding upstream 634014 11759353 ~ 11797070 (+)
robo3 robo3 coding downstream 46813 12478623 ~ 12630735 (+)
pknox2 pknox2,LOC107691639 coding downstream 248946 12680756 ~ 12754307 (+)
panx3 panx3,LOC107747045,LOC107579026,LOC107686209,LOC107691702,LOC107589683 coding downstream 323593 12755403 ~ 12762340 (+)
opcml opcml,LOC108277316,LOC108423784,LOC107686109,LOC107746995,LOC107588660,LOC107577150,LOC107691701,LOC107751394 coding downstream 381990 12813800 ~ 13030680 (+)
LOC113543571 NA coding downstream 884128 13315938 ~ 13316216 (+)
G267429 NA non-coding upstream 419795 11981181 ~ 12011289 (+)
G267381 NA non-coding upstream 562421 11863887 ~ 11868663 (+)
G267362 NA non-coding upstream 602266 11828569 ~ 11828818 (+)
G267317 NA non-coding upstream 778896 11650429 ~ 11652188 (+)
G267314 dyrk1a non-coding upstream 803112 11624374 ~ 11627972 (+)
G267801 LOC107739129 non-coding downstream 90376 12522186 ~ 12522521 (+)
G268027 NA non-coding downstream 334343 12766153 ~ 12766367 (+)
G268580 hspa8,LOC107577128,LOC100125490,LOC108423781,LOC107691633,LOC108277936,LOC107597532 non-coding downstream 1000924 13432734 ~ 13475498 (+)
G268587 NA non-coding downstream 1089342 13521152 ~ 13526385 (+)
LOC117599363 NA non-coding downstream 1427986 13859796 ~ 13863635 (+)
scaf4a scaf4,LOC107555128 other upstream 1548819 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 1860379 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 2668387 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 3006229 9419665 ~ 9424855 (+)
G266161 NA other upstream 3094794 9335801 ~ 9336290 (+)
vps36 vps36,LOC107701118 other downstream 2330503 14762313 ~ 14771073 (+)
trnar-ccu_11 NA other downstream 4655858 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 4655938 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 4656639 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 4656719 17088529 ~ 17088600 (+)

Expression


Co-expression Network