G268587


Basic Information

Item Value
gene id G268587
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 13521152 ~ 13526385 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU318179
CAAGAAGACACCCTCAGCTCCATATCAGGTTGTATGTATTGTACAACACTGAGGCATTTGCAATCTAGAGATATCCTCAGTAAAGAAAAACTTTTCAttctattaaaaaatgaaaaaagggcAGTGCTACATAAAAAGAAACAGTGGAAGCATGATGTACCAGACTGAATCATAATTATTAACTGCTGCATATTACCCTGTGCTACACTGGTCAAAAAGTTAGTAGTTTGTATGACAACTCAGTGGGTTGAAAATGAACATGGTCTcaaatttaatgatttaatgaatgAAGCATGTGCATTATGCAGTGTTGGGCAGTGAGTAGCAAAGTCAATTAGTCAATCTGCTTGCCAACCAGTAGCGATGATATAAAATGAACCAATGTATTGTTTTAGTATGCacaatatgtattttaaatttatcctgTTTAAGTCACCATCTTGCTgttggttaaaaaataaataaataaaataaaataatcgaTTCATTGATCCCAGGCACGAAAACTGAGCCGAACCCAAACCTTAATGTTGATTCCTCAAATGTTTTTGGTAATAATCCAACTAATTGATTAACCAACAAAACAAAGATTATCAAAATAATCGATAGCCGCAACCCTAAAAAAAACCTTatcaaaaatatactttttaaagCAAACCATATGTCACATTTATTGGCACCCCCACATACCACAGTACTTTGTGCAACCTCCCTTTGTCAAGGTAACATCAGCACAATATGAAGCACTAACCCGACTCCACGGATCTGCAGCTGAGGCTGTGTGCCTGCCTCTTTGGTCTTCACTGTCTGGTAAGTGACTATAGTGGCCGTTGCACTGCCTGATCCCATATCATAAAACATCACATTCTGTCGAGAGGAAAGAAGACGACAATATTAAAAGAGTGAACatcaaaattacattttaattttccttgCTGACTTGCTTAATTTGAGGTACCTGGGCAGTTGCGTTGATATCTTTCCTTCTGAAGAGTCCATAGTTCAAAGCCACAGCTGTATTGTCATTGATGAGCTGAAGGACCTTCAAACCTGCCATCTGAGCAGCCTGCAGGACTGCCCTACGTTCTGCCTGGTTAAAAAAGGCTGGAACGGTGATGACTACATCTTTAATGATTTGTTCTGTGAAGACGAACATACAAAGAGCCACCCTTAGGTTTCTCTATAACAACATGTCACAGCACTATTTCACAAAGGCAGTCAGACAGACAAACTCGATTTGAATAGGCAAACCTGCAAAATCCTCAGCCAGGCCACGAGAGTAGTTCAGTACCATGCCCAAGAACTCCTCTGGAGTATACTGCATCTCCCTGTGGAATTCAAAGAAGCAATATGTAGAGCAATATGGGCAAACTGCAGTAAATGATGCATTTAGATTTATCATTGATTCCTACAATGAGTAATGCTGCTCATTTAATATAGTCTACCAACTTTCTATAAACAATCAGTGAAAGATTCCAGGTGCAAgtatttaaatacagaaatttgAGTCAGGGGCAACTGCACAGTAATGATGTTCATTAAAGCAAGTCAACCAAATAATTATGATTTGTCTGTGTTTAATCACTCCAGAATGTTATTGTCTGCCAGCTGCTATAGTGAGAAACATAGTTATACAGTTGAGATCatgcatttttccccatttctgtttgaaagctactagccAGCTACCTATGCCCTGAGCTCAGGTATATTGAGACAGCCAGTGAAATACTGAAAGACTACTTCAGGAGTAGATACAATTTTATTAGATAAGGTGCCATTCCTCCCCCAACTGCatataattttaatcattttcaataGAACTGTCTTGCAAAATTGGGGaaggttgcgtcaggaagggcatccggtgtaaaaactgtgccaaatcagatatgcggaccaatgatacACTGTGGCGACatctaacgggagcagccgaaagaagaagaagaacaagattAATGGCAATATTGGTCAACTAGATGGtgccttaaataattaaatgacacAATCTGAAAACCACTGCTGCCTGGCATCTCACTGATCCATTTAACTCTACAGATCGAGtggtgattttatttagcatatttcagGTAGGTTCAAAACccattttgttttatgtttaaaatatataaagtatcatCTGATCATTTAATAGCCTATTGAGTGCATCAAGACATTACATTATAACAAGGCTGCATATATTTCAAATTTGTTAGTTCTCTGTTACATATTGTCAAATAGAAAGGTGCTGACTGAAAGTAAGATTAACAGCTTAATGATGTACTGATATGGGGAAAGTTGCATCCAAGGAGTAGCTGTAATGTGCTtcagtaataaactaataaattggacagtgagtgtatattcaaacacagcataaacaataaacatataTACGGGAATGACAGATTACTCACTCAGAGTATTTGAAATACACTGTTCCCCTCTTTTCATCTCGGACTAACTGGTGTTCGGGAAAGTGTTTCTGATAGTGCTCAACCTGTAGGTTGTCTGCGGTCTTTCCCAAAAGGCTCTGGATATACCTGTACACCACTTTAGGATTCTTCACAGACTGAAATGAGCACACATTAAAATTCAGTTAAACTTTGAGGACTGGATTCAAACGTAGAAATGTAGTTCCAAAACTGTCAGAAAGGGACTCACCACTCCCATAGCGCCGTCCCCAAAAAGTCGTTCGTTTTCTTTTAAGCATACAGCCACTGGAGTTTTCCTTCTGGACTCCctgaagaaaacacaacaaaaaatattactgACTTTTAAGGGGAAAAAGGAGAACATGCTGGATAAAGGTCCAACAAAAACTTAGTGTTTTAGGTTTTGTACTTGTTCAGGACGATTTCCATCGGCACACCAGGCTTAACTATAGCTACTTTCATCCATTCGCTTCCCAGGTCTACAGACATCACAGCAACTGAAGCTGTTCAGTAGAAAAGAGTGACGATTAGGACACTTCAATTcagcaaaatgtaaaatctgaGAACTGATAATCTCTGTTTAGAATTGTTGATCAATAAGTAAGCAATAACAGTGAATGTACAGCAATTATTATGGTTGCAAACATCCAAATCCTGTAATATAGCTTGTAACCAGaactcattcatttttttttttaagcaaaactATTGACACTAGAGACTGTTTTCTAGTATGATGACTACATTGttctgtgtgttcatgcacgGACAAAACTCAAAGTCTAAGCCTCAGATGCTTGTATTTTGTGCTTCACCTGTTGGAGAAGGAAAGAGTGCTAGGGCGAGGCAGAACAACGCCAATAATGGCAGCTTTTCCCTCATTGTAAccttaaagaaaaatgaaaacacaacagctgtTAGAATTCAGTACAGTTGGAGCAATCCACGTTGTTATGGCCGTTTAAGCCATGCAAATAATTCAAAGTGGGATCAGCGTGAAGCAGATAGTCATGACTACCCATGACCCTGTTATTACATCATCTAGTTCAGGACTCATTTGGTGATTTCCCAACTTGAACACACCTAGTAAACCTGGTAATGAACTGATGACTTAACAGATGTGTGAAAGCAGAAGAAAATACCAAGCTGTGCTGGACTCCAGCTGAACACACCTGATCTATTAAAGATAGACATCATGCTGAGAGAAACAGGTATAGTCAAGCAGAGTTACTAGACAGAAGCTGCTCTCACATGCATATGCAAGATCTGCTTCCTCTAACCAAAGAGGAAAAGCAAAACTGGTCTGGGGTCAGCATAAAATAGCAACTTCCACTATCTTTCAAACACGTGGACTTGATTACAGTGGTGCCCATGTAGCCATCTAACACAGATACTGCTCTGAAACATCATTATTTATcagagatagatatatatatgtgcatgtCGTTTTGCAAATTGTTGATTGTTAACTTCTAGACGTAAACAAACATCTACCAGCTATCTCTAGCAGGATGGGTGAGCAGTGGAGTGTGGAAACTTCTGGTGCTGTTGCCTTTGTCTAATAGTGACGCACACAAAGCTGATAGCCGGATCCTGAAGGCTGGGGGCCACGAGCGCTCCACATTAAAACCGGATCCTTTAAGTCGATTCATGATGATTACACAAACCTGATGCTCATTTATAAGGTTAGATAGAAGCAGGATGCAGGCGTGAcctaatgtaaatgtaatgttagaGCAGAACAGCCAGTTAGCAGGCTGCGCTTAGCTAGCTAGCGGAATCAtagaccaaaaaaacacaagccaGCCGGAGATCCTATAACGCTGACTAGATCTAAAGATGGAAACCGGAAATCTATGTACATAAACATACCTATACACAGAAGTTAACGTATCCATTGGCAAGTTCATAGCGCTGAAGCTAAGATGAAATGTGGTAAAACTTACCTTGAGTGGTAGAAGTTTTTCTATGGGAACTGAATGACTGGTGCAGGTGAAGCTTATCTGACAGCGTGAACAATAAGAAAAGCTCTTCGTGCACTTCTCAGACTTGAATACTGCTCCCTGGTAAATGTCAGATTAATGCCGACTGAGCAGAACCCATGCGGTAGCAGCGGCGGTGTTTTATAGTCACGCTGCACAGCGTTGTCTTGATATCAGTGCTACAGCAGTCACCGGCTCGTTGCAGCCACCGGGCCCTGGACGCGGCGTGATCTCATTGGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU318179 True 4661 lncRNA 0.40 2 13521152 13526385

Neighbor

gene id symbol gene type direction distance location
LOC113543522 hist2h2l,zgc:194989,LOC107719244,LOC103356012,LOC108277172,LOC107574861 coding upstream 15602 13504657 ~ 13505550 (+)
zpr1 zpr1,LOC107693980,LOC107747003 coding upstream 17765 13494721 ~ 13503387 (+)
pwp1 pwp1,LOC105905702 coding upstream 28035 13491329 ~ 13493117 (+)
bsx bsx,LOC107747047,LOC107589660,LOC107751411,LOC107579003 coding upstream 70359 13448733 ~ 13450793 (+)
LOC113543571 NA coding upstream 204936 13315938 ~ 13316216 (+)
vps11 vps11,LOC107744603 coding downstream 2950 13529335 ~ 13539892 (+)
ift46 ift46 coding downstream 14177 13540562 ~ 13547225 (+)
LOC113543629 NA coding downstream 20952 13547337 ~ 13550191 (+)
tmem126a t126a,tmem126a coding downstream 255962 13782347 ~ 13784904 (+)
arrb2a arrb2,LOC100335038,LOC106567894,LOC105023937 coding downstream 285321 13811706 ~ 13822838 (+)
G268580 hspa8,LOC107577128,LOC100125490,LOC108423781,LOC107691633,LOC108277936,LOC107597532 non-coding upstream 45654 13432734 ~ 13475498 (+)
G268027 NA non-coding upstream 754785 12766153 ~ 12766367 (+)
G267801 LOC107739129 non-coding upstream 998631 12522186 ~ 12522521 (+)
G267499 NA non-coding upstream 1089342 12431084 ~ 12431810 (+)
G267429 NA non-coding upstream 1509863 11981181 ~ 12011289 (+)
LOC117599363 NA non-coding downstream 333411 13859796 ~ 13863635 (+)
LOC117599376 NA non-coding downstream 416300 13942685 ~ 13947023 (+)
G269251 NA non-coding downstream 1029101 14555486 ~ 14556349 (+)
G269268 NA non-coding downstream 1070579 14596964 ~ 14597818 (+)
LOC117599336 NA non-coding downstream 1072222 14598607 ~ 14604363 (+)
scaf4a scaf4,LOC107555128 other upstream 2638887 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 2950447 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 3758455 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 4096297 9419665 ~ 9424855 (+)
G266161 NA other upstream 4184862 9335801 ~ 9336290 (+)
vps36 vps36,LOC107701118 other downstream 1235928 14762313 ~ 14771073 (+)
trnar-ccu_11 NA other downstream 3561283 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 3561363 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 3562064 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 3562144 17088529 ~ 17088600 (+)

Expression


Co-expression Network