G269635 (lmnb1)


Basic Information

Item Value
gene id G269635
gene name lmnb1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 15279083 ~ 15289443 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU319438
TCCTGGATCTGGGCGTGCAGATCTGCTAGCATGGCCTCCAGGGCTTTCTTCTCAGAGTAGGCCGTGGACAGACTAGCCTCCTTAGTGTTCAATAACGCCTCCACGTCCTTCAGCCGAGCCTGACAGCCGGCCAGGTCAGCGTCCTTTTTAGCATAGCTACAATTCTGCAGCAGTTGTTCATGCTCGGTTCGGAGTTTTCCCAGCTCGATCTGCAGCCTGGCCCGCTCTTTCGCCGTGTCGTCCAGAGAGCGCCGCGCGTCCGCGAGCTCCGTCTCATACAGAGCCTTGAGGCCGGTCAGCTCCCGGCTCCTCACCTCTTCCTTTTCAGAAATCTGCAGGTGAAGAACGCTGTTCTCTGACTCTAGACTCCTGACTTTGTCGATGTAAGTGGCCAGGCGGTCGTTGAGGTTGCTCAGCTCCTCTTTCTCCTGCAGCCTGGTGATCCTTGTGGGGCTCAGAGGAGTGCCGCCGCCGGCGGTGCTCGCCCGGGTGCTTATCCTCTGGCCGGCCGGGGTGGAAGTGGCGGTCGCCATTCTAAACTGAAAAGCtggaataaaagtaaaatatcctTAGGTTTTTGGTTGGACAATATGAATTGATACGACGCTGGAAACCGTTTCTTTAGAATGCTAACTATTTCGGCTAGCACCACGACGTAAAAACGATTAGGAATATGGTTATATATAGCCAAGTGGTCGATAGATAAGGGCCCAGAGCAGCGTAAATTAGCTTAAATAATTAGGTAGAAACGCGAAGTTAATGTTAAGTCATCCTATATTAAACACAGCACCTATAAGACACAAAAGCTAACGGAAGGAAAaagataacaataaaaaaaaacccgcaAAGCTCACACAAATACCTTACTTTGTGTTCC

Function

symbol description
lmnb1 Predicted to be located in intermediate filament. Human ortholog(s) of this gene implicated in adult-onset autosomal dominant demyelinating leukodystrophy and primary autosomal recessive microcephaly. Orthologous to human LMNB1 (lamin B1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU319438 True 877 lncRNA 0.51 2 15279083 15289443

Neighbor

gene id symbol gene type direction distance location
marchf3 march3 coding upstream 8853 15245742 ~ 15270230 (+)
c17h5orf63 c16h5orf63 coding upstream 36825 15235268 ~ 15242258 (+)
LOC113543506 fbn2 coding upstream 236091 14979387 ~ 15042992 (+)
LOC113543667 LOC108277389 coding upstream 301556 14966170 ~ 14977527 (+)
LOC113543668 kiaa1024l coding upstream 356996 14919053 ~ 14922087 (+)
LOC113543594 LOC108276641 coding downstream 1107 15290550 ~ 15295056 (+)
aldh7a1 aldh7a1 coding downstream 20698 15310141 ~ 15321553 (+)
LOC113543572 LOC108277262,LOC108424566,LOC105901058,LOC106603267,LOC105010780 coding downstream 147711 15437154 ~ 15462074 (+)
LOC113543573 NA coding downstream 172808 15462251 ~ 15473800 (+)
apbb1 apbb1 coding downstream 184886 15474329 ~ 15485123 (+)
G269583 NA non-coding upstream 104591 15174268 ~ 15174492 (+)
G269569 NA non-coding upstream 121838 15128297 ~ 15157245 (+)
G269431 dact3 non-coding upstream 416077 14860755 ~ 14863006 (+)
G269396 NA non-coding upstream 492888 14785647 ~ 14786195 (+)
G269393 NA non-coding upstream 495398 14782961 ~ 14783685 (+)
G269641 NA non-coding downstream 7101 15296544 ~ 15298327 (+)
G269642 phax non-coding downstream 10451 15299894 ~ 15304874 (+)
G269852 NA non-coding downstream 142601 15432044 ~ 15486563 (+)
G269989 NA non-coding downstream 632618 15922061 ~ 15929335 (+)
G269993 NA non-coding downstream 639999 15929442 ~ 15929868 (+)
vps36 vps36,LOC107701118 other upstream 508010 14762313 ~ 14771073 (+)
scaf4a scaf4,LOC107555128 other upstream 4396818 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 4708378 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 5516386 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 5854228 9419665 ~ 9424855 (+)
trnar-ccu_11 NA other downstream 1798225 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 1798305 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 1799006 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 1799086 17088529 ~ 17088600 (+)
trnar-ccu_13 NA other downstream 1799784 17089227 ~ 17089299 (+)

Expression


Co-expression Network