G269641


Basic Information

Item Value
gene id G269641
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 15296544 ~ 15298327 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU319448
GCTGTTACTTCGTGACATGTCGTGACAACAGACAACAGAAGAAAATCATGGGGAAGAATACAGACAGCCTTCTCACACTTCTTAATTGTTAGTCGGAgtaaaaatattctaaaattcttaacattattaataaattttgAAGGATAGTCAGAAAAGGATGTGTCAAACAAGCTTAAAATGGATTCTAAAtagaactttattttaaaattcggTACTTAAGGATTCAGTAGCAAACATAAAACTTACATGAGACCATTTTATTCATCGTCAAAACACTCACTTGACATGATGAGTATTCTGAATGCTTAGTGTATCTGAATACGCTGTCATTTTTCACAAATACAAATTTGACATTGTGATTAGTCAATGGCAGGCAGAATAAGTGCAAGATGGTGAAGCATCATTACTACTAGATTGTGACAGTTGCTCAGACTGTTGCTTTATATTAAGCATAATATCAGCCATCAATACTTATACAAGTACTTTTAAGCATATTCTTTGGACTATGCACTATGATTTTCAGTAGGGAATGAACTGAATGTATGATTAGGTTTAACTTAGCTGCACAGCCATTTAATACTAAAAGAATTATGAAATTAGTGGGCAAGCAAAAGTGCATCGTTGTAACTGACTTCACTAACAGTATACTGCATAAAAGCTCTCATCTTACAAATTTGTCATGAataaggctgctttcacactatttttatttttttgtctactgaaaaaaaaaagcagtggaaAGGAATGAAGTGCCTTCTCTGAACCAATATGCTGTCTGTTTCCCAGAAGCTTCGTCCTGGGAGACATACAGCATCCAAGACCACTGTACTCAGCCAGATTTATACTAGGACTTGTTCCTGACATCAGATACCATTTGTTATCTCTAGCAACATTGAAATATTTCCAGAAGAATACATCATTAAGCACCACATATCCACTCAAtaacaaaactattttttttctaccagCACTGTCCTCCATGTTGATTCTTCTCGCTTGCCCCtgagctgaaatctgattgATGAAAACATGTTTGATGTCACTCAtcacttttctgaaaagtggAGCTTTCCTCTTTTACTTTTAGAAGAGCTCCACAGTGACAGGATCACATtctgccttcttcccataagATTACATACAGAACGTATACAGGGAGAAACACCTAGTGTGGAAGCAGCCTAAGGTTTCTGAGCttgttcacacacacacacacacacacacacacacacacacacacacacacacatacacctttaTGCAGTGCAGAACTTGCCATGTCCAAACTCACACAAGAGATGGAGCATGAAATGGTGGAAAAGAAATGaccacatcaaacacacatactTTAAATGAAATCTAATCTGCTCAGCCCACATCACTAAACATGGTGACAGCAAACTTTATTGTCTAGTCACTGTCTACACAGTCACTCAGGAAGACAGCCAGCAGCATCAGAAGACCTCCAGGTCATTCGAGTTGTAAATTACAGGAGCTTCCTCTGTGCCCAGTGCAGACTCGGGTTGGTCCTCACCCCCATCCTCCAGCGACTCCAAAGCATCGTTGGTGTCACTGGCAAACGTTTCCCGAGAAACGTCATCGTGCTCCTGCAGGTCTAAAGTGCCGAtcgcttgcttcattttcttgGCTGTTAAGTATTTTTGCCGCTGCTTGGCTGCCTTCTTGTTTGCCTTCTTGTTGTTATACTCTTTCTGGTTCTCTTCATAGAATATTTCC
>TU319449
ttcttaacattattaataaattttgAAGGATAGTCAGAAAAGGATGTGTCAAACAAGCTTAAAATGGATTCTAAAtagaactttattttaaaattcggTACTTAAGGATTCAGTAGCAAACATAAAACTTACATGAGACCATTTTATTCATCGTCAAAACACTCACTTGACATGATGAGTATTCTGAATGCTTAGTGTATCTGAATACGCTGTCATTTTTCACAAATACAAATTTGACATTGTGATTAGTCAATGGCAGGCAGAATAAGTGCAAGATGGTGAAGCATCATTACTACTAGATTGTGACAGTTGCTCAGACTGTTGCTTTATATTAAGCATAATATCAGCCATCAATACTTATACAAGTACTTTTAAGCATATTCTTTGGACTATGCACTATGATTTTCAGTAGGGAATGAACTGAATGTATGATTAGGTTTAACTTAGCTGCACAGCCATTTAATACTAAAAGAATTATGAAATTAGTGGGCAAGCAAAAGTGCATCGTTGTAACTGACTTCACTAACAGTATACTGCATAAAAGCTCTCATCTTACAAATTTGTCATGAataaggctgctttcacactatttttatttttttgtctactgaaaaaaaaaagcagtggaaAGGAATGAAGTGCCTTCTCTGAACCAATATGCTGTCTGTTTCCCAGAAGCTTCGTCCTGGGAGACATACAGCATCCAAGACCACTGTACTCAGCCAGATTTATACTAGGACTTGTTCCTGACATCAGATACCATTTGTTATCTCTAGCAACATTGAAATATTTCCAGAAGAATACATCATTAAGCACCACATATCCACTCAAtaacaaaactattttttttctaccagCACTGTCCTCCATGTTGATTCTTCTCGCTTGCCCCtgagctgaaatctgattgATGAAAACATGTTTGATGTCACTCAtcacttttctgaaaagtggAGCTTTCCTCTTTTACTTTTAGAAGAGCTCCACAGTGACAGGATCACATtctgccttcttcccataagATTACATACAGAACGTATACAGGGAGAAACACCTAGTGTGGAAGCAGCCTAAGGTTTCTGAGCttgttcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacctttaTGCAGTGCAGAACTTGCCATGTCCAAACTCACACAAGAGATGGAGCATGAAATGGTGGAAAAGAAATGaccacatcaaacacacatactTTAAATGAAATCTAATCTGCTCAGCCCACATCACTAAACATGGTGACAGCAAACTTTATTGTCTAGTCACTGTCTACACAGTCACTCAGGAAGACAGCCAGCAGCATCAGAAGACCTCCAGGTCATTCGAGTTGTAAATTACAGGAGCTTCCTCTGTGCCCAGTGCAGACTCGGGTTGGTCCTCACCCCCATCCTCCAGCGACTCCAAAGCATCGTTGGTGTCACTGGCAAACGTTTCCCGAGAAACGTCATCGTGCTCCTGCAGGTCTAAAGTGCCGAtcgcttgcttcattttcttgGCTGTTAAGTATTTTTGCCGCTGCTTGGCTGCCTTCTTGTTTGCCTTCTTGTTGTTATACTCTTTCTGGTTCTCTTCATAGAATATTTCC
>TU319450
ttcttaacattattaataaattttgAAGGATAGTCAGAAAAGGATGTGTCAAACAAGCTTAAAATGGATTCTAAAtagaactttattttaaaattcggTACTTAAGGATTCAGTAGCAAACATAAAACTTACATGAGACCATTTTATTCATCGTCAAAACACTCACTTGACATGATGAGTATTCTGAATGCTTAGTGTATCTGAATACGCTGTCATTTTTCACAAATACAAATTTGACATTGTGATTAGTCAATGGCAGGCAGAATAAGTGCAAGATGGTGAAGCATCATTACTACTAGATTGTGACAGTTGCTCAGACTGTTGCTTTATATTAAGCATAATATCAGCCATCAATACTTATACAAGTACTTTTAAGCATATTCTTTGGACTATGCACTATGATTTTCAGTAGGGAATGAACTGAATGTATGATTAGGTTTAACTTAGCTGCACAGCCATTTAATACTAAAAGAATTATGAAATTAGTGGGCAAGCAAAAGTGCATCGTTGTAACTGACTTCACTAACAGTATACTGCATAAAAGCTCTCATCTTACAAATTTGTCATGAataaggctgctttcacactatttttatttttttgtctactgaaaaaaaaaagcagtggaaAGGAATGAAGTGCCTTCTCTGAACCAATATGCTGTCTGTTTCCCAGAAGCTTCGTCCTGGGAGACATACAGCATCCAAGACCACTGTACTCAGCCAGATTTATACTAGGACTTGTTCCTGACATCAGATACCATTTGTTATCTCTAGCAACATTGAAATATTTCCAGAAGAATACATCATTAAGCACCACATATCCACTCAAtaacaaaactattttttttctaccagCACTGTCCTCCATGTTGATTCTTCTCGCTTGCCCCtgagctgaaatctgattgATGAAAACATGTTTGATGTCACTCAtcacttttctgaaaagtggAGCTTTCCTCTTTTACTTTTAGAAGAGCTCCACAGTGACAGGATCACATtctgccttcttcccataagATTACATACAGAACGTATACAGGGAGAAACACCTAGTGTGGAAGCAGCCTAAGGTTTCTGAGCttgttcacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacctttaTGCAGTGCAGAACTTGCCATGTCCAAACTCACACAAGAGATGGAGCATGAAATGGTGGAAAAGAAATGaccacatcaaacacacatactTTAAATGAAATCTAATCTGCTCAGCCCACATCACTAAACATGGTGACAGCAAACTTTATTGTCTAGTCACTGTCTACACAGTCACTCAGGAAGACAGCCAGCAGCATCAGAAGACCTCCAGGTCATTCGAGTTGTAAATTACAGGAGCTTCCTCTGTGCCCAGTGCAGACTCGGGTTGGTCCTCACCCCCATCCTCCAGCGACTCCAAAGCATCGTTGGTGTCACTGGCAAACGTTTCCCGAGAAACGTCATCGTGCTCCTGCAGGTCTAAAGTGCCGAtcgcttgcttcattttcttgGCTGTTAAGTATTTTTGCCGCTGCTTGGCTGCCTTCTTGTTTGCCTTCTTGTTGTTATACTCTTTCTGGTTCTCTTCATAGAATATTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU319448 True 1740 lncRNA 0.39 2 15296544 15298327
TU319449 False 1640 lncRNA 0.39 2 15296658 15298327
TU319450 False 1634 lncRNA 0.39 2 15296658 15298327

Neighbor

gene id symbol gene type direction distance location
LOC113543594 LOC108276641 coding upstream 1488 15290550 ~ 15295056 (+)
marchf3 march3 coding upstream 26314 15245742 ~ 15270230 (+)
c17h5orf63 c16h5orf63 coding upstream 54286 15235268 ~ 15242258 (+)
LOC113543506 fbn2 coding upstream 253552 14979387 ~ 15042992 (+)
LOC113543667 LOC108277389 coding upstream 319017 14966170 ~ 14977527 (+)
aldh7a1 aldh7a1 coding downstream 11814 15310141 ~ 15321553 (+)
LOC113543572 LOC108277262,LOC108424566,LOC105901058,LOC106603267,LOC105010780 coding downstream 138827 15437154 ~ 15462074 (+)
LOC113543573 NA coding downstream 163924 15462251 ~ 15473800 (+)
apbb1 apbb1 coding downstream 176002 15474329 ~ 15485123 (+)
LOC113543513 LOC108277159,LOC108427265 coding downstream 252598 15550925 ~ 15753891 (+)
G269635 lmnb1 non-coding upstream 7101 15279083 ~ 15289443 (+)
G269583 NA non-coding upstream 122052 15174268 ~ 15174492 (+)
G269569 NA non-coding upstream 139299 15128297 ~ 15157245 (+)
G269431 dact3 non-coding upstream 433538 14860755 ~ 14863006 (+)
G269396 NA non-coding upstream 510349 14785647 ~ 14786195 (+)
G269642 phax non-coding downstream 1567 15299894 ~ 15304874 (+)
G269852 NA non-coding downstream 133717 15432044 ~ 15486563 (+)
G269989 NA non-coding downstream 623734 15922061 ~ 15929335 (+)
G269993 NA non-coding downstream 631115 15929442 ~ 15929868 (+)
G269994 NA non-coding downstream 631613 15929940 ~ 15930641 (+)
vps36 vps36,LOC107701118 other upstream 525471 14762313 ~ 14771073 (+)
scaf4a scaf4,LOC107555128 other upstream 4414279 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 4725839 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 5533847 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 5871689 9419665 ~ 9424855 (+)
trnar-ccu_11 NA other downstream 1789341 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 1789421 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 1790122 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 1790202 17088529 ~ 17088600 (+)
trnar-ccu_13 NA other downstream 1790900 17089227 ~ 17089299 (+)

Expression


Co-expression Network