Gene
RNA
| Item | Value |
|---|---|
| gene id | G269642 |
| gene name | phax |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 15299894 ~ 15304874 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| phax | Predicted to enable RNA binding activity. Predicted to be involved in snRNA export from nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human PHAX (phosphorylated adaptor for RNA export). |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU319452 | True | 448 | lncRNA | 0.54 | 2 | 15299894 | 15304874 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113543594 | LOC108276641 | coding | upstream | 4838 | 15290550 ~ 15295056 (+) |
| marchf3 | march3 | coding | upstream | 29664 | 15245742 ~ 15270230 (+) |
| c17h5orf63 | c16h5orf63 | coding | upstream | 57636 | 15235268 ~ 15242258 (+) |
| LOC113543506 | fbn2 | coding | upstream | 256902 | 14979387 ~ 15042992 (+) |
| LOC113543667 | LOC108277389 | coding | upstream | 322367 | 14966170 ~ 14977527 (+) |
| aldh7a1 | aldh7a1 | coding | downstream | 5267 | 15310141 ~ 15321553 (+) |
| LOC113543572 | LOC108277262,LOC108424566,LOC105901058,LOC106603267,LOC105010780 | coding | downstream | 132280 | 15437154 ~ 15462074 (+) |
| LOC113543573 | NA | coding | downstream | 157377 | 15462251 ~ 15473800 (+) |
| apbb1 | apbb1 | coding | downstream | 169455 | 15474329 ~ 15485123 (+) |
| LOC113543513 | LOC108277159,LOC108427265 | coding | downstream | 246051 | 15550925 ~ 15753891 (+) |
| G269641 | NA | non-coding | upstream | 1567 | 15296544 ~ 15298327 (+) |
| G269635 | lmnb1 | non-coding | upstream | 10451 | 15279083 ~ 15289443 (+) |
| G269583 | NA | non-coding | upstream | 125402 | 15174268 ~ 15174492 (+) |
| G269569 | NA | non-coding | upstream | 142649 | 15128297 ~ 15157245 (+) |
| G269431 | dact3 | non-coding | upstream | 436888 | 14860755 ~ 14863006 (+) |
| G269852 | NA | non-coding | downstream | 127170 | 15432044 ~ 15486563 (+) |
| G269989 | NA | non-coding | downstream | 617187 | 15922061 ~ 15929335 (+) |
| G269993 | NA | non-coding | downstream | 624568 | 15929442 ~ 15929868 (+) |
| G269994 | NA | non-coding | downstream | 625066 | 15929940 ~ 15930641 (+) |
| G269997 | tex15 | non-coding | downstream | 635631 | 15940505 ~ 15941293 (+) |
| vps36 | vps36,LOC107701118 | other | upstream | 528821 | 14762313 ~ 14771073 (+) |
| scaf4a | scaf4,LOC107555128 | other | upstream | 4417629 | 10865612 ~ 10882265 (+) |
| G266868 | LOC108276566 | other | upstream | 4729189 | 10569028 ~ 10570705 (+) |
| dclk1a | dclk1,LOC107728871,LOC107577778 | other | upstream | 5537197 | 9704360 ~ 9762697 (+) |
| LOC113543674 | NA | other | upstream | 5875039 | 9419665 ~ 9424855 (+) |
| trnar-ccu_11 | NA | other | downstream | 1782794 | 17087668 ~ 17087740 (+) |
| trnam-cau_40 | NA | other | downstream | 1782874 | 17087748 ~ 17087819 (+) |
| trnar-ccu_12 | NA | other | downstream | 1783575 | 17088449 ~ 17088521 (+) |
| trnam-cau_41 | NA | other | downstream | 1783655 | 17088529 ~ 17088600 (+) |
| trnar-ccu_13 | NA | other | downstream | 1784353 | 17089227 ~ 17089299 (+) |
