G269994


Basic Information

Item Value
gene id G269994
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 15929940 ~ 15930641 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU319854
TGGACACCCCTGGCTTAGTGAGAGCAGCCCGTCAGTGTCTCTACTTCCTGCAGAGGCTTAAGAGGTTTAGCATTTCCTCTGACATCTGTCAAACTTCTACTGCTGCACCACAGAGAGCATTCTGACCGGCTGCATCAATGTTTGGTACGGCAGCTGCTCTTCCGCCAACCACAAAGCTCTTCAGAGAGTGATGAGAACAACAGAGCACATAGATGGAAATAAACTCCCAGCCTTACAGGACATTTACCAACCGCATTGTTTGAGAAAGGCTCGCAGTATTATTAAGGACTGCACTCACCCTGCTCACTACCCATTTGCGACACTGCCGTCTGACAGACGCCTCCGTTAGATCCAATCACGGACAGCCAGactgaaaaacagtttttatctTCAAGCCATCAGACTGCTTAACAGCCAGCAGTCCTTCATCTGGCACTGTGACACTTTATTACTGCCACTTCGGGACACTTAGATATTTACTATTCAGATTTACTATTTACTGTActtgtatttactgttctgccTTACATAATAGCACATCACTTTTACTCTGCCATTGTCCACCACTGTTTTCACTTACCTTATTATATCACAGCATCATCTCAACCATTCATGTCtaaatgtgtttgttcatgTCTAATAAGTGCTTGTACTGTCAAAGTCCAAATCTGAGACTTGTCACAAGTATTTCAATGCCCAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU319854 True 702 lncRNA 0.44 1 15929940 15930641

Neighbor

gene id symbol gene type direction distance location
ubxn8 NA coding upstream 10380 15914224 ~ 15919560 (+)
LOC113543513 LOC108277159,LOC108427265 coding upstream 176049 15550925 ~ 15753891 (+)
apbb1 apbb1 coding upstream 444817 15474329 ~ 15485123 (+)
LOC113543573 NA coding upstream 456140 15462251 ~ 15473800 (+)
LOC113543572 LOC108277262,LOC108424566,LOC105901058,LOC106603267,LOC105010780 coding upstream 467866 15437154 ~ 15462074 (+)
wrn wrn coding downstream 27917 15958558 ~ 15987780 (+)
nrg1 nrg1 coding downstream 62867 15993508 ~ 16075236 (+)
sh2d4a sh2d4a coding downstream 316310 16246951 ~ 16257688 (+)
ddx4 ddx4 coding downstream 348440 16279081 ~ 16292173 (+)
LOC113543581 NA coding downstream 368453 16299094 ~ 16310306 (+)
G269993 NA non-coding upstream 72 15929442 ~ 15929868 (+)
G269989 NA non-coding upstream 605 15922061 ~ 15929335 (+)
G269852 NA non-coding upstream 443377 15432044 ~ 15486563 (+)
G269642 phax non-coding upstream 625066 15299894 ~ 15304874 (+)
G269641 NA non-coding upstream 631613 15296544 ~ 15298327 (+)
G269997 tex15 non-coding downstream 9864 15940505 ~ 15941293 (+)
G269998 NA non-coding downstream 10818 15941459 ~ 15941659 (+)
G270002 NA non-coding downstream 13995 15944636 ~ 15945856 (+)
G270003 NA non-coding downstream 23987 15954628 ~ 15954876 (+)
G270012 NA non-coding downstream 57644 15988285 ~ 15988510 (+)
vps36 vps36,LOC107701118 other upstream 1158867 14762313 ~ 14771073 (+)
scaf4a scaf4,LOC107555128 other upstream 5047675 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 5359235 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 6167243 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 6505085 9419665 ~ 9424855 (+)
trnar-ccu_11 NA other downstream 1157027 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 1157107 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 1157808 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 1157888 17088529 ~ 17088600 (+)
trnar-ccu_13 NA other downstream 1158586 17089227 ~ 17089299 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G306089 NA non-coding CI01000092 null 3742480 ~ 3743248 (-)