G269997 (tex15)


Basic Information

Item Value
gene id G269997
gene name tex15
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 15940505 ~ 15941293 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU319861
GAAAACAATCAGATTTTTCCCACTACATGTGCTTGCGGTTGCATGCTTCAGAGCCACATCAACATGCTTAAACAAATAAACCCCATGTGAGGGCTTTCCCAAAGAATACTGGTCCTGGCTCCCAGTCCTTAGTCCAAACTGGTAAATATGGCTTGTTGCTTCATAAGATGCTACCAAGAAGCAAAACCGTTCTTCCATTTCTCTCCCATGTCTACCTTTTGTACGCATCTCTGACCTTTTTTTCGGAGAATTCCTTAAGAAACCCATCATTGTTCACTAATTTTACATCTTTCCACAGCCAGGCATTAGCATGCTccttcctcatgtctaatctggATTCTCTCAGTTTAGACTGAATGAGAGTGTAATCGCGACTGTCTTCTGGACAAGGCTCCAGGAGGACTGCTCAATAgagtacaaagtcaaaaaagcacatttaaaactcaCAGGACATGACTTGTTATGACTGAGACAATATAATGACTACACATCCTTTCTTCTCAGAAAGACTGCTAATATGTGTTATGTATTTTTGGTAAGCTGGTAAAACCTTGCCCAGACACCCTCTTCTTCCTGGGTATAGTGAAGTTCCTCAATGCCACAGTCCCTACTGGCTTAGTTGGGTTAGATGTGGAAATCTCGATGGACCCTTTTCTTCCTCGTACTTCCATAGTTGCTTACTGCAGAATATGACCC

Function

symbol description
tex15 Predicted to act upstream of or within homologous chromosome pairing at meiosis; male meiotic nuclear division; and regulation of double-strand break repair via homologous recombination.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU319861 True 696 lncRNA 0.42 2 15940505 15941293

Neighbor

gene id symbol gene type direction distance location
ubxn8 NA coding upstream 20945 15914224 ~ 15919560 (+)
LOC113543513 LOC108277159,LOC108427265 coding upstream 186614 15550925 ~ 15753891 (+)
apbb1 apbb1 coding upstream 455382 15474329 ~ 15485123 (+)
LOC113543573 NA coding upstream 466705 15462251 ~ 15473800 (+)
LOC113543572 LOC108277262,LOC108424566,LOC105901058,LOC106603267,LOC105010780 coding upstream 478431 15437154 ~ 15462074 (+)
wrn wrn coding downstream 17265 15958558 ~ 15987780 (+)
nrg1 nrg1 coding downstream 52215 15993508 ~ 16075236 (+)
sh2d4a sh2d4a coding downstream 305658 16246951 ~ 16257688 (+)
ddx4 ddx4 coding downstream 337788 16279081 ~ 16292173 (+)
LOC113543581 NA coding downstream 357801 16299094 ~ 16310306 (+)
G269994 NA non-coding upstream 9864 15929940 ~ 15930641 (+)
G269993 NA non-coding upstream 10637 15929442 ~ 15929868 (+)
G269989 NA non-coding upstream 11170 15922061 ~ 15929335 (+)
G269852 NA non-coding upstream 453942 15432044 ~ 15486563 (+)
G269642 phax non-coding upstream 635631 15299894 ~ 15304874 (+)
G269998 NA non-coding downstream 166 15941459 ~ 15941659 (+)
G270002 NA non-coding downstream 3343 15944636 ~ 15945856 (+)
G270003 NA non-coding downstream 13335 15954628 ~ 15954876 (+)
G270012 NA non-coding downstream 46992 15988285 ~ 15988510 (+)
G270229 NA non-coding downstream 47360 15988653 ~ 15988855 (+)
vps36 vps36,LOC107701118 other upstream 1169432 14762313 ~ 14771073 (+)
scaf4a scaf4,LOC107555128 other upstream 5058240 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 5369800 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 6177808 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 6515650 9419665 ~ 9424855 (+)
trnar-ccu_11 NA other downstream 1146375 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 1146455 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 1147156 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 1147236 17088529 ~ 17088600 (+)
trnar-ccu_13 NA other downstream 1147934 17089227 ~ 17089299 (+)

Expression


Co-expression Network