G270229


Basic Information

Item Value
gene id G270229
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 15988653 ~ 15988855 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU320120
TCAAGAATGAGCAAGGAGGTATATAAAATAGCTGTGGAGTAATCTTGGCAATATACCCAAACATAGATTCATTTAACTAACTTTTAATATGGTTTATTGTGCACATGCTCAATTTTGCTGTTTTACACTTTACAAGTTTTCCATGCTGTGCATTGATCCAGCTCATTAGACAGCAGCTGATGATTGAAATGAATGCTTCTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU320120 True 203 lncRNA 0.35 1 15988653 15988855

Neighbor

gene id symbol gene type direction distance location
wrn wrn coding upstream 873 15958558 ~ 15987780 (+)
ubxn8 NA coding upstream 69093 15914224 ~ 15919560 (+)
LOC113543513 LOC108277159,LOC108427265 coding upstream 234762 15550925 ~ 15753891 (+)
apbb1 apbb1 coding upstream 503530 15474329 ~ 15485123 (+)
LOC113543573 NA coding upstream 514853 15462251 ~ 15473800 (+)
nrg1 nrg1 coding downstream 4653 15993508 ~ 16075236 (+)
sh2d4a sh2d4a coding downstream 258096 16246951 ~ 16257688 (+)
ddx4 ddx4 coding downstream 290226 16279081 ~ 16292173 (+)
LOC113543581 NA coding downstream 310239 16299094 ~ 16310306 (+)
map3k1 map3k1 coding downstream 389538 16378393 ~ 16417773 (+)
G270012 NA non-coding upstream 143 15988285 ~ 15988510 (+)
G270003 NA non-coding upstream 33777 15954628 ~ 15954876 (+)
G270002 NA non-coding upstream 42797 15944636 ~ 15945856 (+)
G269998 NA non-coding upstream 46994 15941459 ~ 15941659 (+)
G269997 tex15 non-coding upstream 47360 15940505 ~ 15941293 (+)
G270236 NA non-coding downstream 5998 15994853 ~ 15995055 (+)
G270289 NA non-coding downstream 121516 16110371 ~ 16138309 (+)
LOC117599367 NA non-coding downstream 146454 16135309 ~ 16136866 (+)
G270341 NA non-coding downstream 243310 16232165 ~ 16264813 (+)
G270437 NA non-coding downstream 305017 16293872 ~ 16294107 (+)
vps36 vps36,LOC107701118 other upstream 1217580 14762313 ~ 14771073 (+)
scaf4a scaf4,LOC107555128 other upstream 5106388 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 5417948 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 6225956 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 6563798 9419665 ~ 9424855 (+)
trnar-ccu_11 NA other downstream 1098813 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 1098893 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 1099594 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 1099674 17088529 ~ 17088600 (+)
trnar-ccu_13 NA other downstream 1100372 17089227 ~ 17089299 (+)

Expression


Co-expression Network