G270449


Basic Information

Item Value
gene id G270449
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 16328511 ~ 16328772 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU320399
gaaaaaaataacgaGAACTAACTTTTTACGTTTTTCGCTttcatgtttcacagatgttccacattacACTCACTGGCATATTGCTGAGATAGAGAAATAAAATTCTTCAGGACATGCTGGTATCGAAAATAACCAATAACAccctgttgattaattttcttataaTAGCATGCACTGTGATGTTTAATTCCTTACCTATAAGCCCAATTGGCTGGTCACTTgaatttaatatgtaaaaatcaATCCTCAATAAAGTTTACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU320399 True 262 lncRNA 0.33 1 16328511 16328772

Neighbor

gene id symbol gene type direction distance location
LOC113543581 NA coding upstream 18205 16299094 ~ 16310306 (+)
ddx4 ddx4 coding upstream 36338 16279081 ~ 16292173 (+)
sh2d4a sh2d4a coding upstream 70823 16246951 ~ 16257688 (+)
nrg1 nrg1 coding upstream 253275 15993508 ~ 16075236 (+)
wrn wrn coding upstream 340731 15958558 ~ 15987780 (+)
map3k1 map3k1 coding downstream 49621 16378393 ~ 16417773 (+)
hmgcs1 hmgcs1,LOC108277226,LOC108427280,LOC107715876 coding downstream 91268 16420040 ~ 16429223 (+)
tln1 tln1 coding downstream 104802 16433574 ~ 16507636 (+)
tpm2 tpm2,LOC108276716,LOC108427282,LOC103044350,LOC107102752,LOC102218310,LOC103389160,LOC107670037,LOC108242564,LOC106571564,LOC107572193,LOC107394912,LOC107737084,LOC105894628 coding downstream 182463 16511235 ~ 16534943 (+)
zgc:114200 aph1a,LOC108427283,LOC100304952,LOC107572194,LOC107670051 coding downstream 209997 16538769 ~ 16552518 (+)
G270437 NA non-coding upstream 34404 16293872 ~ 16294107 (+)
G270341 NA non-coding upstream 63698 16232165 ~ 16264813 (+)
G270289 NA non-coding upstream 190202 16110371 ~ 16138309 (+)
LOC117599367 NA non-coding upstream 191645 16135309 ~ 16136866 (+)
G270236 NA non-coding upstream 333456 15994853 ~ 15995055 (+)
G270495 NA non-coding downstream 22476 16351248 ~ 16351459 (+)
G270520 NA non-coding downstream 56258 16385030 ~ 16385932 (+)
G270525 NA non-coding downstream 181771 16510543 ~ 16510747 (+)
G270536 dcp2,LOC107564107,LOC107702577 non-coding downstream 247591 16576363 ~ 16577240 (+)
G270626 NA non-coding downstream 297212 16625984 ~ 16626358 (+)
vps36 vps36,LOC107701118 other upstream 1557438 14762313 ~ 14771073 (+)
scaf4a scaf4,LOC107555128 other upstream 5446246 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 5757806 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 6565814 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 6903656 9419665 ~ 9424855 (+)
trnar-ccu_11 NA other downstream 758896 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 758976 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 759677 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 759757 17088529 ~ 17088600 (+)
trnar-ccu_13 NA other downstream 760455 17089227 ~ 17089299 (+)

Expression


Co-expression Network