G270520


Basic Information

Item Value
gene id G270520
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 16385030 ~ 16385932 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU320479
GTCTCAAGCTGGTTTAGActcttagtgtttttttttaatgtcgtTGGCAGCACATACTGAATAATAGAATCCTAATTTATGTGTATTGAACCAAAAAAATCTGGGAATTGCCCTCAGTGTGCCATCTTGCCTGTAAATATAGCTGGTATTGGTGTGTAAAGATATTTGCCCTCATTCTGTCGAGTGGAGGTCTCATGAGATTTGGCCTATTTTGTCTAACCAGTCAAGGCCTCTTCACGGTCACCAGAAAGCGCCTGTTTAATGCCTGGGTTAGCTGAAACGCTCATGCCTGGATGATGGCAACAAAGGTCCGGATATTTCCATGCCCATTAGGCCCTGTGGGCCCGCACAGGGATCCTCCAACCTCCCCCCCGTTTCTGTTTAGTTAGCAGCAGGACGAGGCAAGCTAGAGATTACATgtgaaaagcaaacacacaggTCCCTGTTTAATACGGCCCAGATTACTAGTTAAAACAATATGTCTTGTGGAGGGGCCTTTGGTAGATGCCCTTAGCACATCCACATCCATGCACATGTGAGACTGACCCTggtctgaaaaaacaaacaaaaaaagccctGTGTGATCACACGTTCCAGTAATGCAGGGAGAAAAATAATCTGGATAAAGTAAATGCATAATTTGTAGAAGTGAACGAGGAAATGGCTTTGGTTCCGTCCATAGAAGTGTTTAGTTATAGTGTTGTCACTTTCAAAATCTGGGAGGTTACccataaaatacaCACCAAGTCTCCAGGTGACTCTTAAATGACCTTAAACTGCACAAAGAATTTCATCCTCAGCAAGAATGGCCATTAGGAGTATacaatatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU320479 True 830 lncRNA 0.43 2 16385030 16385932

Neighbor

gene id symbol gene type direction distance location
LOC113543581 NA coding upstream 74724 16299094 ~ 16310306 (+)
ddx4 ddx4 coding upstream 92857 16279081 ~ 16292173 (+)
sh2d4a sh2d4a coding upstream 127342 16246951 ~ 16257688 (+)
nrg1 nrg1 coding upstream 309794 15993508 ~ 16075236 (+)
wrn wrn coding upstream 397250 15958558 ~ 15987780 (+)
hmgcs1 hmgcs1,LOC108277226,LOC108427280,LOC107715876 coding downstream 34108 16420040 ~ 16429223 (+)
tln1 tln1 coding downstream 47642 16433574 ~ 16507636 (+)
tpm2 tpm2,LOC108276716,LOC108427282,LOC103044350,LOC107102752,LOC102218310,LOC103389160,LOC107670037,LOC108242564,LOC106571564,LOC107572193,LOC107394912,LOC107737084,LOC105894628 coding downstream 125303 16511235 ~ 16534943 (+)
zgc:114200 aph1a,LOC108427283,LOC100304952,LOC107572194,LOC107670051 coding downstream 152837 16538769 ~ 16552518 (+)
reep5 reep5,LOC108246451 coding downstream 197104 16583036 ~ 16589994 (+)
LOC117599337 NA non-coding upstream 20288 16327619 ~ 16364742 (+)
G270495 NA non-coding upstream 33571 16351248 ~ 16351459 (+)
G270449 NA non-coding upstream 56258 16328511 ~ 16328772 (+)
G270437 NA non-coding upstream 90923 16293872 ~ 16294107 (+)
G270341 NA non-coding upstream 120217 16232165 ~ 16264813 (+)
G270525 NA non-coding downstream 124611 16510543 ~ 16510747 (+)
G270536 dcp2,LOC107564107,LOC107702577 non-coding downstream 190431 16576363 ~ 16577240 (+)
G270626 NA non-coding downstream 240052 16625984 ~ 16626358 (+)
G270716 NA non-coding downstream 411913 16797845 ~ 16798435 (+)
G270833 NA non-coding downstream 675049 17060981 ~ 17078555 (+)
vps36 vps36,LOC107701118 other upstream 1613957 14762313 ~ 14771073 (+)
scaf4a scaf4,LOC107555128 other upstream 5502765 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 5814325 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 6622333 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 6960175 9419665 ~ 9424855 (+)
trnar-ccu_11 NA other downstream 701736 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 701816 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 702517 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 702597 17088529 ~ 17088600 (+)
trnar-ccu_13 NA other downstream 703295 17089227 ~ 17089299 (+)

Expression


Co-expression Network