G271104


Basic Information

Item Value
gene id G271104
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 17769769 ~ 17773380 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU321218
AAAACCTAAAAAAGCATCTGGATGAGATCTCAAAGACATCTAACAACGCGTGTTCGATCTGAGCTTGACTTGTGCTCTCTTCTACTGCCAAATCCTCAAGGCTTTCatggatggaaaaaaagagcTCGGtccaggaaagaaaaaaaagaatGTTAATTTCCAATGATGGAAAAGCGGAGAAGTCGCCATTTAAAATCTCACCTTAGACCAGAATTTGGAGCCGACAGGTCTGTACTGCAGCTCGAACTTCAATGGAAAGGCGACAGACGCATCTGAGGGCCATGAGGCAGGCGGCTTCCAATGAACAAACAGCTGCGTGGGCTCTGCATTCACTTGCTCGCAGATCAGTTCCTCAGGAGCGTCAGGCTttactacacacatacatgaaCCTAGCCTTAGTTCTGAATTTTGCCACTTAACGACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU321218 True 425 lncRNA 0.46 2 17769769 17773380

Neighbor

gene id symbol gene type direction distance location
tmem267 tmem267,si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107554852 coding upstream 11546 17751578 ~ 17758223 (+)
rassf6 rassf6 coding upstream 26173 17728618 ~ 17743596 (+)
lpar1 lpar1,LOC107554848,LOC107723319 coding upstream 80773 17665665 ~ 17688996 (+)
LOC113544058 epha5,LOC108428864,LOC107702602 coding upstream 160184 17552931 ~ 17609585 (+)
plppr1 plppr1,LOC107702599,LOC107653496,LOC107710008,LOC107750956,LOC102776600,LOC106568589 coding upstream 372952 17355099 ~ 17396817 (+)
sigmar1 sigmar1,LOC107573076,LOC107653128 coding downstream 442203 18215583 ~ 18218914 (+)
katnal2 katnal2,LOC107573073,LOC102797751 coding downstream 447388 18220768 ~ 18231104 (+)
hdhd2 hdhd2,LOC107738843,LOC107743237 coding downstream 461989 18235369 ~ 18240105 (+)
LOC113543970 LOC108276577,LOC108262336 coding downstream 592690 18366070 ~ 18372136 (+)
si:dkey-88l16.3 LOC108277154 coding downstream 599332 18372712 ~ 18398037 (+)
G271102 NA non-coding upstream 5240 17759550 ~ 17764529 (+)
G271076 NA non-coding upstream 78908 17689656 ~ 17690861 (+)
G270913 NA non-coding upstream 380790 17361945 ~ 17388979 (+)
G270893 NA non-coding upstream 476886 17277656 ~ 17292883 (+)
G270873 scd5 non-coding upstream 620350 17136712 ~ 17149419 (+)
G271235 NA non-coding downstream 351442 18124822 ~ 18125792 (+)
G271340 NA non-coding downstream 524742 18298122 ~ 18348384 (+)
LOC117599343 NA non-coding downstream 652692 18426072 ~ 18427190 (+)
G271542 NA non-coding downstream 1139877 18913257 ~ 18913627 (+)
G271544 NA non-coding downstream 1144629 18918009 ~ 18918576 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 668700 17099096 ~ 17101069 (+)
trnam-cau_42 NA other upstream 680391 17089307 ~ 17089378 (+)
trnar-ccu_13 NA other upstream 680470 17089227 ~ 17089299 (+)
trnam-cau_41 NA other upstream 681169 17088529 ~ 17088600 (+)
trnar-ccu_12 NA other upstream 681248 17088449 ~ 17088521 (+)
G271406 NA other downstream 630889 18404269 ~ 18407498 (+)
G271863 NA other downstream 1468329 19241709 ~ 19243905 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other downstream 1602712 19376092 ~ 19414627 (+)
LOC113544004 LOC108276941 other downstream 1715826 19489206 ~ 19520777 (+)
LOC113543969 NA other downstream 2009047 19782427 ~ 19786831 (+)

Expression


Co-expression Network