G271235


Basic Information

Item Value
gene id G271235
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 18124822 ~ 18125792 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU321384
TAGGACAACACAGACTGTAGCACATTCAGAACTGCTGATGGTATCCGCACAGGACCTTCTGCTGTGCCTCTGTTAATTGGCTTAATTGGGAAAATGTCACGTCTCCGAAAGTCAGTGGTCTAAGACAAAGGTTGAAGAAAAGCTCCAGTCTGGTAGGTCCTGCTTAAACTGGAGGGGCAAAA
>TU321386
cttggtttttttttccagactgcacagcaaaaacacaagatatatacttCAGTAATGCCATGTTCTGGCAACGTACCTTGACACATATAGCCCTTCTTTACAGATATGGTGCTGGTGTTTTTTCCAGGGCCTGAAAAATTGATGTCAGCTGATGTCAGAGCATTTGAGCACTCTAATAAAAGCAATAACACTAATCTCTCATCTGGTGCATTATTGTGGTATATGATGATGGATCTGAAGTACAACTGATAAAAACCTCTCTAGCAGTTATTATTTTCTAGACATTCAGTAGTAAACTCTCACCTCTGATAACAGAATGGTATGTCCCTGAAATGTTTAGGGCATGTTGTTCTGGCAACAGAGAAGCTCTCACAGAAATCAGAAAGATTGATCTGACTGATACTCCATTTCAAACTGATTCCCTAAATTCCTTgtatactctagtgtacttgGTCAATAACACACAATTCTGATGGAAATGTGAACCAGTTCCTAAAAATATACCTGGTTCCATGAACAACACCAGTTCCAGGACCAGCACCAGCAacatggaaaatggaaaatggaaaaagtggTATTGgcggctcagtggttaaggatgAAGGCTATATCCATATAAACAGGTAAGAGTAAACCAAACCACAAAAAAACTTAGTCAATTCTAGAACCTGAATGTAAGTTGTTTTATGAATTATAATTCTTAATCACTACAATATGCTGAAGAACTTCTCGGCCCGACATCTCAAATATCACCCGGCACTGGAACAGATGGCCAGGACAGAGTCAGGCTAGGACAACACAGACTGTAGCACATTCAGAACTGCTGATGGTATCCGCACAGGACCTTCTGCTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU321384 False 182 lncRNA 0.47 1 18125611 18125792
TU321386 True 855 lncRNA 0.40 1 18124822 18125676

Neighbor

gene id symbol gene type direction distance location
tmem267 tmem267,si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107554852 coding upstream 366599 17751578 ~ 17758223 (+)
rassf6 rassf6 coding upstream 381226 17728618 ~ 17743596 (+)
lpar1 lpar1,LOC107554848,LOC107723319 coding upstream 435826 17665665 ~ 17688996 (+)
LOC113544058 epha5,LOC108428864,LOC107702602 coding upstream 515237 17552931 ~ 17609585 (+)
plppr1 plppr1,LOC107702599,LOC107653496,LOC107710008,LOC107750956,LOC102776600,LOC106568589 coding upstream 728005 17355099 ~ 17396817 (+)
sigmar1 sigmar1,LOC107573076,LOC107653128 coding downstream 89791 18215583 ~ 18218914 (+)
katnal2 katnal2,LOC107573073,LOC102797751 coding downstream 94976 18220768 ~ 18231104 (+)
hdhd2 hdhd2,LOC107738843,LOC107743237 coding downstream 109577 18235369 ~ 18240105 (+)
LOC113543970 LOC108276577,LOC108262336 coding downstream 240278 18366070 ~ 18372136 (+)
si:dkey-88l16.3 LOC108277154 coding downstream 246920 18372712 ~ 18398037 (+)
G271104 NA non-coding upstream 351442 17769769 ~ 17773380 (+)
G271102 NA non-coding upstream 360293 17759550 ~ 17764529 (+)
G271076 NA non-coding upstream 433961 17689656 ~ 17690861 (+)
G270913 NA non-coding upstream 735843 17361945 ~ 17388979 (+)
G270893 NA non-coding upstream 831939 17277656 ~ 17292883 (+)
G271340 NA non-coding downstream 172330 18298122 ~ 18348384 (+)
LOC117599343 NA non-coding downstream 300280 18426072 ~ 18427190 (+)
G271542 NA non-coding downstream 787465 18913257 ~ 18913627 (+)
G271544 NA non-coding downstream 792217 18918009 ~ 18918576 (+)
G271545 NA non-coding downstream 792802 18918594 ~ 18919467 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 1023753 17099096 ~ 17101069 (+)
trnam-cau_42 NA other upstream 1035444 17089307 ~ 17089378 (+)
trnar-ccu_13 NA other upstream 1035523 17089227 ~ 17089299 (+)
trnam-cau_41 NA other upstream 1036222 17088529 ~ 17088600 (+)
trnar-ccu_12 NA other upstream 1036301 17088449 ~ 17088521 (+)
G271406 NA other downstream 278477 18404269 ~ 18407498 (+)
G271863 NA other downstream 1115917 19241709 ~ 19243905 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other downstream 1250300 19376092 ~ 19414627 (+)
LOC113544004 LOC108276941 other downstream 1363414 19489206 ~ 19520777 (+)
LOC113543969 NA other downstream 1656635 19782427 ~ 19786831 (+)

Expression


Co-expression Network