G271340


Basic Information

Item Value
gene id G271340
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 18298122 ~ 18348384 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU321496
gggagagagagagagagagagagagagagagagagagagagagagagagaggaaagagacagagagaagtaCTATGAGAGAGAATCGGGGATTATAGCACGTCTGTTGTTCTACTTGTCGTTTCTTGTGATTGTGGACTTTGCAGATTTCGGGGGAAGGGGCGTGGGCATCGTCGCCATGGCGATTAGGACATACTGGAACAGCGGGCGGTGGGAGAACCCATCTGGGTCAGAACCTTATCCAGCCACTGCAACGGTCCGTTCAAGTGCAGCTCAATCCAGCATGGAGTGCTCGTCACAGTCTGCcg

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU321496 True 307 lncRNA 0.53 2 18298122 18348384

Neighbor

gene id symbol gene type direction distance location
hdhd2 hdhd2,LOC107738843,LOC107743237 coding upstream 58017 18235369 ~ 18240105 (+)
katnal2 katnal2,LOC107573073,LOC102797751 coding upstream 67018 18220768 ~ 18231104 (+)
sigmar1 sigmar1,LOC107573076,LOC107653128 coding upstream 79208 18215583 ~ 18218914 (+)
tmem267 tmem267,si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107554852 coding upstream 539899 17751578 ~ 17758223 (+)
rassf6 rassf6 coding upstream 554526 17728618 ~ 17743596 (+)
LOC113543970 LOC108276577,LOC108262336 coding downstream 17686 18366070 ~ 18372136 (+)
si:dkey-88l16.3 LOC108277154 coding downstream 24328 18372712 ~ 18398037 (+)
parm1 NA coding downstream 66203 18414587 ~ 18420080 (+)
trnam-cau_43 NA coding downstream 110701 18459085 ~ 18459156 (+)
trnar-ccu_14 NA coding downstream 111408 18459792 ~ 18459864 (+)
G271235 NA non-coding upstream 172330 18124822 ~ 18125792 (+)
G271104 NA non-coding upstream 524742 17769769 ~ 17773380 (+)
G271102 NA non-coding upstream 533593 17759550 ~ 17764529 (+)
G271076 NA non-coding upstream 607261 17689656 ~ 17690861 (+)
G270913 NA non-coding upstream 909143 17361945 ~ 17388979 (+)
LOC117599343 NA non-coding downstream 77688 18426072 ~ 18427190 (+)
G271542 NA non-coding downstream 564873 18913257 ~ 18913627 (+)
G271544 NA non-coding downstream 569625 18918009 ~ 18918576 (+)
G271545 NA non-coding downstream 570210 18918594 ~ 18919467 (+)
G271548 NA non-coding downstream 574980 18923364 ~ 18923583 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 1197053 17099096 ~ 17101069 (+)
trnam-cau_42 NA other upstream 1208744 17089307 ~ 17089378 (+)
trnar-ccu_13 NA other upstream 1208823 17089227 ~ 17089299 (+)
trnam-cau_41 NA other upstream 1209522 17088529 ~ 17088600 (+)
trnar-ccu_12 NA other upstream 1209601 17088449 ~ 17088521 (+)
G271406 NA other downstream 55885 18404269 ~ 18407498 (+)
G271863 NA other downstream 893325 19241709 ~ 19243905 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other downstream 1027708 19376092 ~ 19414627 (+)
LOC113544004 LOC108276941 other downstream 1140822 19489206 ~ 19520777 (+)
LOC113543969 NA other downstream 1434043 19782427 ~ 19786831 (+)

Expression


Co-expression Network