G271552


Basic Information

Item Value
gene id G271552
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 18929522 ~ 18931055 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU321768
tggattggacctgtttgtccagcacatcccacagatactcgattggattgagatctggggaatttggaggccaagtcaacatcttgcaccctttgtcatgttcctcaaaccattcctgaataattttttgcagtgtggcagggggtgcattatcctgctgaaagaggccactgtcatTTATGGAACAGTGTTATGGAACACTGTTGCCATAAAGGGGAGTACTtgatctgcaacaatgtttaggtaggtggtacgtacAAAAGTAACAACCTTATGAATGCCAGGaaccaaggtttcccagcataacattgcccagagcatcacactgcctccattggcttgccttcttcccatagtgcatcctggtgccatctcttccccaggtaagcgatgcacacgcacccggccatccacatgacaTAAAAGAAAACGTATTTCATCAGAAAAGGCTACCGTctttcattgctccatggtccagttctgatgctcacatgcccattgtaggcgcttttggcagtggacaggggtcagcatgggcactatgacaggtctgcggctacgcagccccatatgcagcaagctgtgatgaactgtgtgttctgacacctttctatcatggccagcattaactttttcagcaatttgtgctacagtagctcttctgtggggtCAGACCAGAAAGGCAAACCTatgctccccacacgcatcagtgagccttgggtgcccatgacactgttgccagttcaccggttgtccttccttggaccacttttggtaggtactaaccactgcataccaggaacaccccataagacctgccattttggagatgctcagATAGTACTCAGACTCATGATTACTTCAGAATGAAATGCAGCCATAGTTCATTGTTCATTTTTCCTGGAGTGCAAACACACTAGACAGCTATGATTTGAAAAACGGCTTGTGTCTACactttaactgaaataaaaacagtcatcttgatttggcaaagagagagagagagagagagagagagagagagagaattttttaataattttaactaGCAGTGCTGGAGGACTGACAGGAAGTGGCCTGAGATGAGTCTTGCTAACTTTATGATATGGCTGTGACATAAAAGATCACTTTATCAATCAGGAagcattaaatgttaaaagcaGTTAATAATTTAGTTTTCATTTGTGCATCATGAGTACATTGTCCAGCTCAGCACAATGAAGTAAAGCTCTTAAGGAGATGGAGCCAGGCGGCTTTTATGCAGCTGAACATTAGATCTAAAGACACCAATTGTTCATCATCTATTTGACTTCTGCAACCCTCTGCAAACCTGGCCTGCCAACACCCTCCTGTTAACCCCTTAGATTCCCAGAACCCACTGACAGACTCAGACTTAAATTTATCAGTCTAGAAATGACATacgttttttttctgttactttCACTGTAATTACTAAATACCTTATAGTAGTTACTCAATACTGTGAGTAAGGTGAATAATTTAATAAGCTGGGTCTTTAAGGGGTTAAACAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU321768 True 1534 lncRNA 0.44 1 18929522 18931055

Neighbor

gene id symbol gene type direction distance location
plpp5 plpp5,LOC108440555 coding upstream 23333 18900339 ~ 18906189 (+)
nsd3 whsc1l1,LOC107687514,LOC107720716 coding upstream 31715 18867607 ~ 18897807 (+)
ggt5b LOC108277204 coding upstream 141935 18760163 ~ 18787587 (+)
setd1ba setd1b,setd1ba,LOC108425171,LOC107689149,LOC107658592 coding upstream 272180 18635792 ~ 18657342 (+)
tmem120b t120b,tmem120b,LOC107689172,LOC107658534,LOC103032067,LOC107758658 coding upstream 312020 18608968 ~ 18617502 (+)
trnas-cga_2 NA coding downstream 3829 18934884 ~ 18934965 (+)
trnas-uga_6 NA coding downstream 4077 18935132 ~ 18935213 (+)
trnas-uga_7 NA coding downstream 4542 18935597 ~ 18935678 (+)
trnas-uga_8 NA coding downstream 4852 18935907 ~ 18935988 (+)
trnas-uga_9 NA coding downstream 5834 18936889 ~ 18936970 (+)
G271550 NA non-coding upstream 5451 18923815 ~ 18924071 (+)
G271548 NA non-coding upstream 5939 18923364 ~ 18923583 (+)
G271545 NA non-coding upstream 10055 18918594 ~ 18919467 (+)
G271544 NA non-coding upstream 10946 18918009 ~ 18918576 (+)
G271542 NA non-coding upstream 15895 18913257 ~ 18913627 (+)
G271554 NA non-coding downstream 2856 18933911 ~ 18934140 (+)
G271555 pcna,LOC107658578,LOC107688976,LOC107583397 non-coding downstream 6488 18937543 ~ 18940887 (+)
G271557 NA non-coding downstream 11702 18942757 ~ 18943019 (+)
G271540 NA non-coding downstream 27113 18958168 ~ 18960267 (+)
G271568 NA non-coding downstream 29473 18960528 ~ 18960767 (+)
G271406 NA other upstream 522024 18404269 ~ 18407498 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 1828453 17099096 ~ 17101069 (+)
trnam-cau_42 NA other upstream 1840144 17089307 ~ 17089378 (+)
trnar-ccu_13 NA other upstream 1840223 17089227 ~ 17089299 (+)
trnam-cau_41 NA other upstream 1840922 17088529 ~ 17088600 (+)
G271863 NA other downstream 310654 19241709 ~ 19243905 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other downstream 445037 19376092 ~ 19414627 (+)
LOC113544004 LOC108276941 other downstream 558151 19489206 ~ 19520777 (+)
LOC113543969 NA other downstream 851372 19782427 ~ 19786831 (+)
G272180 NA other downstream 862857 19793912 ~ 19825232 (+)

Expression


Co-expression Network