G271555 (pcna,LOC107658578,LOC107688976,LOC107583397)


Basic Information

Item Value
gene id G271555
gene name pcna,LOC107658578,LOC107688976,LOC107583397
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 18937543 ~ 18940887 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU321771
ACATTACAAAACGTTTATTATTGGGTAACAGAATGAAAGGACCAAATTGgcatatttacagatatttctTATCTACAAAGTATTGGAATGAGGATGGACAAACTCCTAGTGCTTAAAGAGGCAAATCAGAGTAGGACtcaaaaaggaaaaggaagggaaagaaaaaaaaaaaaaaaatgaagactgAAAGTATAACACATTGATGTGACCTTCACTGTTTGGACAGTCTGTTGTGTCTGTTCCCTGATTTGCGAGCCAAGGAACTGCCAAAATGTACCAGTTATGCAGGCAGAGTTGGGGCTGAAGAGGATGATGCAAGAATTCAGGATGACTCCTCGTCAATTTTAGGAGCCAGGTAGTACTTGATGTGACCCATATCTGCAATCTTATACTCCACCACAAGTGGAATATCTGCAGACATGCTGAGAGTGACTGTCTTGGATAGAGGAGTGGCCTTGGTGAAAAAGTTCAAGTAGTTCAGAGCAAAAATGAGCTGGACAGGTTCATTCATCTCAATCGTCACATCCTCTTTGTCCACGTTGCTGGTTTGGGACAGTTTGATGTTTCCGGTTCCCAGTTCACCGCTGGCAGAGAACTTCACTCCGTCTTTAGCGCAGGAGATCATCACAGCGTCTCCGATCTGGGACAGATCCCGGCAAATCCGGGCAAATTCTCCAGAGGGCATTTTCACTACACAGCTGTACTCCTGCTcctacaaacacaaaaatatcaaCATTCACTTACTGACCACTTGACCGAGAAGAAACTGTTTGATTGTCTCCAACAACCATCTTATGCAGCATTGCTTCATCAAACACAAGGCACTACGATGTGATCAGTGTTCCacttaaacattaatataatgttCCACTCTTTCCCAAAGCACCCCAATAGTGTTGTTAATGTCCTTTCAACTGTGAGTAATCCACGCCACACAAGAGCATGTCCCGATTCAGTTCAGTCTCTCTCATGTGCACATTTATGACGTGTGTGAACTGGGAGTCTTTCAGTGTCTGATATATTACACTTACTGGAATTCCAAGCTGCTCCACATCCAAGTCCATCAACTTCATCTCATAATCAGAGACTTTCTCCTGATTGAGAGTCTCGAAAACCAGAGCCAGAGAGTCTGCGTTGTCCTCCGCTCTCAGGGTAATGATGTCCTCATTCCCAGCACACTTCAGGATCTTGGACCTGCTGAGGTTGACCCCCATGGCGAGGTTCCTGTCGCAGCGGTACGAGTCGAAGCCGTCGCTGCGCAGTGTGAGCTGCACCAGGGACACATGAGACGAGTCCATGCTCTGCAGAGAGATTCCCGACGAGCTCACATCCCAGCACGCCTCGGTGATCAGATCCTTCAGAGCTTCCAGCACCTTCTTCAGGATGGAGCCTTGAACCAGCCGGGCCTCAAACATttctgcagggttttttttttttttttaaatgttacaacacaaagtaatatttaaatacacaacTAACTAAGTTAGCACGTCTCCGGGATGCTCTAGCTCTTGATATCAGCTCAGGAAACGCGCCTTTTCTCTGATTAAGCTTTGTTTAAAAAGCGAAAACAAAAGAACGCGCGTAACAACTCTGCACCCACGGCCACTCTGA

Function

symbol description
pcna Predicted to enable DNA polymerase processivity factor activity. Acts upstream of or within response to activity and response to bacterium. Located in nucleus. Is expressed in several structures, including anterior neural tube; head; immature eye; nervous system; and pleuroperitoneal region. Orthologous to human PCNA (proliferating cell nuclear antigen).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU321771 True 1617 lncRNA 0.45 5 18937543 18940887

Neighbor

gene id symbol gene type direction distance location
trnas-uga_9 NA coding upstream 573 18936889 ~ 18936970 (+)
trnas-uga_8 NA coding upstream 1555 18935907 ~ 18935988 (+)
trnas-uga_7 NA coding upstream 1865 18935597 ~ 18935678 (+)
trnas-uga_6 NA coding upstream 2330 18935132 ~ 18935213 (+)
trnas-cga_2 NA coding upstream 2578 18934884 ~ 18934965 (+)
trim69 LOC108276850,LOC108440158,LOC103027413,LOC107746217,LOC107658579,LOC107688998 coding downstream 8011 18948898 ~ 18958044 (+)
aak1b aak1b,LOC108276848,LOC108440145,LOC107689018 coding downstream 42246 18983133 ~ 19010793 (+)
LOC117599383 LOC108277332,LOC108440140 coding downstream 127319 19068206 ~ 19073060 (+)
LOC113544111 LOC108277332 coding downstream 141634 19082521 ~ 19101181 (+)
ddhd2 LOC108276773 coding downstream 162306 19103193 ~ 19119113 (+)
G271554 NA non-coding upstream 3403 18933911 ~ 18934140 (+)
G271552 NA non-coding upstream 6488 18929522 ~ 18931055 (+)
G271550 NA non-coding upstream 13472 18923815 ~ 18924071 (+)
G271548 NA non-coding upstream 13960 18923364 ~ 18923583 (+)
G271545 NA non-coding upstream 18076 18918594 ~ 18919467 (+)
G271557 NA non-coding downstream 1870 18942757 ~ 18943019 (+)
G271540 NA non-coding downstream 17281 18958168 ~ 18960267 (+)
G271568 NA non-coding downstream 19641 18960528 ~ 18960767 (+)
G271569 NA non-coding downstream 20415 18961302 ~ 18961555 (+)
G271571 NA non-coding downstream 22468 18963355 ~ 18963780 (+)
G271406 NA other upstream 530045 18404269 ~ 18407498 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 1836474 17099096 ~ 17101069 (+)
trnam-cau_42 NA other upstream 1848165 17089307 ~ 17089378 (+)
trnar-ccu_13 NA other upstream 1848244 17089227 ~ 17089299 (+)
trnam-cau_41 NA other upstream 1848943 17088529 ~ 17088600 (+)
G271863 NA other downstream 300822 19241709 ~ 19243905 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other downstream 435205 19376092 ~ 19414627 (+)
LOC113544004 LOC108276941 other downstream 548319 19489206 ~ 19520777 (+)
LOC113543969 NA other downstream 841540 19782427 ~ 19786831 (+)
G272180 NA other downstream 853025 19793912 ~ 19825232 (+)

Expression


Co-expression Network