G271863


Basic Information

Item Value
gene id G271863
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19241709 ~ 19243905 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU322151
CTGATATTACACATGGAATTTTATTACAATCTTTATCTATTTTAAAACACTAACAGAAATGCAGTGtgtatattttagttttaattaacacacagcacagtaaGTTGAAGTTATATTAACTTTATTAccatacacattttaaataaaggtgTGCAGAGATCCTTCAAGAAAAAGACAACTGTTTATTATGGTACAACAAAGATACAAATGGCAGCTGTGCTCATGAATCCAATAAACACGGCGACTTCTCGCCTTAAGGGATTTACGGCGTCAGTATCGATACAAAGAGGCCACAAATTTTAAATCAGCCATTATTCAACAACACATCATTCTGTCAACTCGACTCAAACCGGGCTGTAGGTTTGCACACACAGTCTGAGTGCATCTGCATCCATACAGCTGAAGGTAGAGTCTTTAATAATAGTGTAACTGTGTTTAGGACCGGGGTTAAGCTGTGTATGTTAGTGTTTTCTTGGGTCATgatcaaaacaaaaatcactgCATATGGATGGGATGGAGTGGGTTCATCACCATTAACTCATCAGTGGTAATGGaattaaaaagtacattatATCTACATATTATATGTgccaataattatttataatgttatattcaGCACACGTGGACTAAATATGTGGAGATAAATTCTGTCCTGTTCATAATGTAGTATAAGGACAGTCGTCTTTAAAGTGTCTGTACTGTTAACAAATCtgtatatatagatttataaaacatgaatgaaagaatgtctTGATTTTGCAAAGTAACAGGCGTCCTGAGGTCAACGATCAacgccatcagccaatcacaaacttCATGTGTAATGTCCCTTGTACTTGTGATgcataaaatgattattttaataacacaATATGAGCATTACATGAACAAGAGTTAATGTTAACGTTAGCTAGACTCTTCAGCTGGATAAAGGGAGCGCATGATACTTTTAGGTAGCTGGCTTTAGCCAGTGAGGTTAACCATTACACTGTGTGATTATACCGGTAAGTCGTCAAGACGAAGTAGTAAACAGAAATGTTCGTGCCGATGTCACGTGACCACACTTGCAATTGGCTGATCAAGCTTAAGCTCCGCCCTTGATATAGCACGGACTCCTGTCACTCTGCACAATCAGTATATTAACCGACTGAGTAACGTCGgactgtaactgtaatattaTCATATCGTAAATTGCaggaaaatgattttataagaTTACATTTTATAAGAGCAAATGTCGGCTCACCAAAACGTCAATTTATGAAGTCTGGCATTAAGGATTCTTTTTACTGAAGGGATGCCGTCTCTCTGAACACTGCAGCCGTGTGGCGAATCAACACTGTACACTTTACCTGCCCCTCACTCAGCACACGTATATACAAAAAACCCAGACAGGGTTAAAAAAAGGCGACAGGAAAAAGAAACCATTTTAAAAGGAGTACTATAGAAAACACgttgcttttaaaataatttccagGAATTAAGACGGTACATACAAAAACATGAAGGGCTTATAAATGAAGTAAGCTCAGCTTTGTAAAGGAAGGGCTCGTCAGGTCTCACTCTCCGGGGAGGAATGGAGGAAGGACAACAGAATAAAATGAAGGAGTACGATGTAGGGTCTGCGTTCAGAGACGGAGCGATGACGAGCAGCGTGAAGAAGAGTCTGACTCCAGCAGGACAGAGCTTCACATGGCCAATATTTACTGCTGAAGAGAGACACAAACATATAGCACACGTTCTGAGTGAAAGTGTCTTCCCTAGTACTTTTCTTCTGATCACGGGGTTTGGTTATCAGTGTGTGCGCAGAATGAATTTACATGAATTTAAACTAATTTTGGCCCATCCATACGCCCATCtgtccatgtgtctgtctgtgcattCATGTGTTCCATCCaagtttctgtctgtctgtccatccatacGTCTTTCTACACGCTAGTCTCTTAgctcatctgtccatccatacGTCTTTCTACACGCTAGTCTCTTAgctcatctgtccatccatacGTCTTTCTACACGCTAGTCTCTTAgctcatctgtccatccatacGTCTTTCTACACGCTAGTCTCTTAgctcatctgtccatccatacGTCTTTCTACACGCTAGTCTCTTAgctcatctgtccatccatacGTCTTTCTACACGCTAGTCTCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU322151 True 2171 TUCP 0.39 2 19241709 19243905

Neighbor

gene id symbol gene type direction distance location
loxl2a loxl2,LOC108440557 coding upstream 13786 19182347 ~ 19227923 (+)
si:ch211-113d22.2 LOC108276771 coding upstream 62861 19173255 ~ 19178848 (+)
tacc1 LOC108276770 coding upstream 73117 19137237 ~ 19168592 (+)
ddhd2 LOC108276773 coding upstream 122596 19103193 ~ 19119113 (+)
LOC113544111 LOC108277332 coding upstream 140528 19082521 ~ 19101181 (+)
sfrp1b NA coding downstream 14726 19258631 ~ 19274853 (+)
pbdc1 pbdc1,LOC107678025,LOC107687677,LOC107705089 coding downstream 125925 19369830 ~ 19375335 (+)
LOC113544087 NA coding downstream 180242 19424147 ~ 19440355 (+)
LOC117599384 NA coding downstream 205900 19449805 ~ 19468222 (+)
LOC117599385 NA coding downstream 241367 19485272 ~ 19489094 (+)
G271853 NA non-coding upstream 12286 19229061 ~ 19229423 (+)
G271576 NA non-coding upstream 229477 19011175 ~ 19012232 (+)
G271571 NA non-coding upstream 277929 18963355 ~ 18963780 (+)
G271569 NA non-coding upstream 280154 18961302 ~ 18961555 (+)
G271568 NA non-coding upstream 280942 18960528 ~ 18960767 (+)
G271884 NA non-coding downstream 89941 19333846 ~ 19335880 (+)
G271923 NA non-coding downstream 238592 19482497 ~ 19484904 (+)
LOC113544143 NA non-coding downstream 573273 19817178 ~ 19825232 (+)
G272246 NA non-coding downstream 722222 19966127 ~ 20008197 (+)
G272249 plpp1 non-coding downstream 979572 20223477 ~ 20226693 (+)
G271406 NA other upstream 834211 18404269 ~ 18407498 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 2140640 17099096 ~ 17101069 (+)
trnam-cau_42 NA other upstream 2152331 17089307 ~ 17089378 (+)
trnar-ccu_13 NA other upstream 2152410 17089227 ~ 17089299 (+)
trnam-cau_41 NA other upstream 2153109 17088529 ~ 17088600 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other downstream 132187 19376092 ~ 19414627 (+)
LOC113544004 LOC108276941 other downstream 245301 19489206 ~ 19520777 (+)
LOC113543969 NA other downstream 538522 19782427 ~ 19786831 (+)
G272180 NA other downstream 550007 19793912 ~ 19825232 (+)
LOC117599326 NA other downstream 582057 19825962 ~ 19830268 (+)

Expression


Co-expression Network