LOC113544004 (LOC108276941)


Basic Information

Item Value
gene id LOC113544004
gene name LOC108276941
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19489206 ~ 19520777 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU322222
cagtttgaatggtactgaatatcagtgcaGGTGTGAGGATCAGTATTTCTGGCCGTGTGAAAAGTGCACAGTATATGGGGCTTGTGATGACATCACCAATGCCTCATGTAGCTGCATCAACGCTATTCCAAATGATGGACGCTTCTGCCGACCAATCAATAACTCTACATGTCCAGCTGTACCCTCCACagCTGAATATCTGATTGAGATTGAGATTGACGCAG
>TU322223
acagtgtgcagtttgaatggtactgaatatcagtgcaGGTGTGAGGATCAGTATTTCTGGCCGTGTGAAAAGTGCACAGTATATGGGGCTTGTGATGACATCACCAATGCCTCATGTAGCTGCATCAACTCTATTCCAAATGATGGACGCTTCTGCCAACCAATCAGTGAGCTGGCTAATAACTCTACATGTCCACCTGTAACATCCACagCTGAATATCTGATTGAGATTGAGATTGGTGCAGTAGATATAACAGTCCTGAAACTCTTAAGGAACCTTTT
>XM_034312833.1
ATCTGATTGAGATTGAGATTGACGCAGTAGACATAACAGTCCTGATACTCTTAAGGAGCCTTTTGCAGACATCCAATTTTCCCTTAATAGATAGTAACATCAATATCACTGAAATGAACATCACTACAGtgtgcagtttgaatggtactgaatatcagtgcaGGTGTGAGGATCAGTATTTCTGGCCGTGTGAAAAGTGCACAGTATATGGGGCTTGTGATGACATCACCAATGCCTCATGTAGCTGCATCAACGCTATTCCAAATGATGGACGCTTCTGCCGACCAATCAGTGAGCTGTCTAATAACTCTACGTGTCCAGCTGTAACACCCACAGCTGAATATCTGATTGAGATTGAGATTGACGCAGTAGACATAACAGTCCTCAATATCTTAAGGAGCCTTTTGCAGACATCCAATTTTCCCTTAATAGATAGTAACATCAATATCACTGAAATGAACATCACTACAGtgtgcagtttgaatggtactgaatatcagtgcaGGTGTGAGGATCAGTATTTCTGGCCGTGTGAAAAGTGCACAGTATATGGGGCTTGTGATGACATCACCAATGCCTCATGTAGCTGCATCAACGCTATTCCAAATGATGGACGCTTCTGCCAACCAATCAGTGAGCTGTCTAATAACTCTACGTGTCCAGCTGTAACACCCACAGCTGAATATCTGATTGAGATTGAGATTGACGCAGTAGACATAACAGTCCTGATACTCTTAAGGAGCCTTTTGCAGACATCCAATTTTCCCTTAATAGATAGTAACATCAATATCACTGAAATGAACATCACTACAGtgtgcagtttgaatggtactgaatatcagtgcaGGTGTGAGGATCAGTATTTCTGGCCGTGTGAAAAGTGCACAGTATATGGGGCTTGTGATGACATCACCAATGCCTCATGTAGCTGCATCAACGCTATTCCAAATGATGGACGCTTCTGCCAACCAATCAGTGAGCTGTCTAATAACTCTACGTGTCCAGCTGTAACACCCACAGCTGAATATCTGATTGAGATTGAGATTGATGCAGTAGACATAACAGTCCTGATACTACTGAAGAACCTTTTGCAGACATCCAGTTTTCCCTTAATAGATAGTAACATCAATATCACTGAAATGAACATCACTACAGtgtgcagtttgaatggtactgaatatcagtgcaGGTGTGAGGATCAGTATTTCTGGCCGTGTGAAAAGTGCACAGTATATGGGGCTTGTGATGACATCACCAATGCCTCATGTAGCTGCATCAACGCTATTCCAAATGATGGACGCTTCTGCCAACCAATCAGTGAGCTGTCTAATAACTCTACGTGTCCAGCTGTAACACCCACAGCTGAATATCTGATTGAGATTGAGATTGATGCAGTAGACATAACAGTCCTGAAACTCTTAAGGAGCCTTTTGCAGACATCCAATTTTCCCTTAATAGATAGTAACATCAATATCACTGAAATGAACATCACTACAGATAACTCTACATGTCCAGCTGTAACACCCACAGCTGAATATCTGATTGAGATTGAGATTGATGCAGTAGACATAACAGTCCTGATACTACTCAAGAACCTTTTGCAGACATCCAGTTTTCCCTTAATAGATAGTAACATCAATATCACTGAAATGAACATCACTACAGtgtgcagtttgaatggtactgaatatcagtgcaGGTGTGAGGATCAGTATTTCTGGCCGTGTGAAAAGTGCACAGTATATGGGGCTTGTGATGACATCACCAATGCCTCATGTAGCTGCATCAACGCTATTCCAAATGATGGACGCTTCTGCCAACCAATCAGTGAGCTGTCTAATAACTCTACATGTCCAGCTGTACCCTCCACagCTGAATATCTGATTGAGATTGAGATTGACGCAGTAGACATAACAGTCCTGAAACTCTTAAGGAGCCTTTTGCAGACATCCAATTTTCCCTTAATAGATAGTAACATCAATATCACTGAAATGAACATCACTACAGtgtgcagtttgaatggtactgaatatcagtgcaGGTGTGAGGATCAGTATTTCTGGCCGTGTGAAAAGTGCACAGTATATGGGGCTTGTGATGACATCACCAATGCCTCATGTAGCTGCATCAACGCTATTCCAAATGATGGACGCTTCTGCCAACCAATCAGTGAGCTGTCTAATAACTCTACGTGTCCAGCTGTAACACCCACAGCTGAATATCTGATTGAGATTGAGATTGATGCAGTAGACATAACAGTCCTGATACTACTGAAGAACCTTTTGCAGACATCCAGTTTTCCCTTAATAGATAGTAACATCAATATCACTGAAATGAACATCACTACAGtgtgcagtttgaatggtactgaatatcagtgcaGGTGTGAGGATCAGTATTTCTGGCCGTGTGAAAAGTGCACAGTATATGGGGCTTGTGATGACATCACCAATGCCTCATGTAGCTGCATCAACTCTATTCCAAATGATGGACGCTTCTGCCAACCAATCAGTGAGCTGGCTAaaataaaactgaCCAAAGATAACTCTACATGTCCACCTGTAACATCCACagCTGAATATCTGATTGAGATTGAGATTGGTGCAGTAGATATAACAGTCCTGAAACTCTTAAGGAACCTTTTGCAGACATCCAATTTTCCCTTAATAGATAGTAACATCAATATCACTGAAATGAACATCACTACAGtgtgcagtttgaatggtactgaatatcagtgcaGGTGTGAGGATCAGTATTTCTGGCCGTGTGAAAAGTGCACAGTATATGGGGCTTGTGATGACATCACCAATGCCTCATGTAGCTGCATCAACGCTATTCCATATGATGGACGCTTCTGCCAACCAATCAATAACTCTACGTGTCCAGCTGTAACACCCACAGAGAACTCTACATGTTCATCTGCAACACCCACAGCACCACCTCTACCCACCCCACTGACACAATCTGTTGAAATCATAGCCAACGCAACAACTGCTGCACCAACCTACACAATTCCACCCACCACATCCACAGTCAATACAGCAACTACTGCAACAGCATCCAACACAACTACAGCCACCACATCCACAGCCAACACAACAACTGctgcaacaacaaacaacacaaatacaCCAACCACGTCCACAGCCTACATAACAACTGCTGCCACCACACTCAACATAATTACAACCACCACATCCACAGCCCAAACAACAACTACTGCAACACCATCCACATCAGCCACAACCACCAAAACCACATCCACCACAACCACATCCATTACATCTGCAGgCATCCATGTATTAAACTTCTCCCTGGCTATAAATGAGGAATTTGACTTTGCACTCACTGATCAACGTAGTGCAAAATACCAAGCATATAAAACAAGAATTGAGAGTTCAAATTTACAGGTAACAGGCATCCAAGACTTTATGAGCAATGTCATCAGTAATACTACAGAAGAGACTCAAACCATAATTGAATCTCCAGCTACCATATTAACAATTGTAGAAATACTGACAATCATTTCCAATCTCTCACAATCAATTTTAATCAATCAACCTGTTATGATGGATTTCCTGAAAACAACGGATGTAATTGGATCAGTAGGTGCACGGGATACATGGgtgcatttaaacaaaaacagtacaacCATGAATGCCAGTTCTGAACTTCTGAAGTCTATTGAGAACGTTGCACGCAGACTCAGGGATGAAAACTTCAACATAACAACAAACTCTACCTCTCTCAGAAAAACTAAAATTACTGCCCCGTTTTCTGAAACATTTGGAAAAAATTTAACTACCCAAATAAGTTTGCCCACGATTAGGGAACCGACTTTCCTCACAGTAATAATTTCTTCCGCCCTTGACAACACCTTACCTGTTCGAAGTCTAACCTACAATGACAGCAGTCAAACTGGCACCAAGATCAATGGAGATGTAGCTATGATTGAGACAAAGTCAACAATTAATaatatttccttttcttttcatgtaAAAAATAAGACATTGGAAAACCCTCAGTGTGTCTTTTGGAACTTTAGTCTTCTGAATGGCGTTGGTGGATGGGACTCAACTGGATGTCAACTAAAGCCATTAGAGAACGAAACCGAAAGTTATACGTGTGAGTGCAATCACACAACTTCTTTTTCAATCCTGATGTCACCATTTTTCCTGGATACAGGCTTAATCTTAGACTATATAACTTACACTGGTGTTGGCATTTCCATGGGCAGCTTGGTTTTGTGCCTCATCATTGAAATCATTATATGGAAATCAGTGACAAGAAACGACACATCCTACATGCGCCATGTCTCCATAGTCAACATTGCTGTATCCCTTCTGATTGCGAACATATGCTTCATCATTGGAGCATCTGTTGTAAAGAAAGGAGAGGGTCCCTGCAGTACAGCGACATTCTTCATGCACTTCTTTTATCTTGCCCTTTTCTTCTGGATGTTGCTGTCAGCACTCTTGCTCCTCTACCGCACCCTCATGGTCTTTTCCAGAATGACCAGAGGCACAATGATGGCCATAGCCTTCACTGTTGGCTATGGAGCCCCGCTAATCATAGCTGTCATTACTGTGGCATCTACAGCTGGAAGCAAAGGATACATTCAAAAAGATTATAATTGCTGGCTAAACTGGAATGAAACGAAGGCCCTCCTGGCATTTGTGATTTCTGCTCTGACTATTGTAGCTATAAACCTCCTGGTGCTTATTGTGGTTCTGTGTAAGATGATGAGGAGAGGAGTTAATGCTTCCACTCAGCCAGATGACAAACATCCCCTACTGGTCATTGCTAGATGTGTAGCAATTTTAACACCTCTCTTTGGTCTAACGTGGGGATTCGGCATTGGGACCATGGTGTCATCAAACTTTGGGATACATGTGGTGTTCGCATTCCTTAATTCACTGCAGGGCttctttattttgctgtttggAATATTACTGGATAGTAAGGTCAGACAAGCATTGGCAGGAAAGCTGGGACTGAGGAACCTCAGCTCTAAAGATACCAGGAGAATGAGTGCAGGACCATCATCCTCAAGTGGACTTCCTTTCATTCAGAGAGTATAACAAAGAAGTacaaaaatgaactgaaatttgATTAATGCATGtgtaatttata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU322222 False 224 lncRNA 0.46 3 19489558 19494875
TU322223 False 281 lncRNA 0.43 3 19496165 19496866
XM_034312833.1 True 5136 mRNA 0.42 35 19489206 19520777

Neighbor

gene id symbol gene type direction distance location
LOC117599385 NA coding upstream 112 19485272 ~ 19489094 (+)
LOC117599384 NA coding upstream 20984 19449805 ~ 19468222 (+)
LOC113544087 NA coding upstream 48851 19424147 ~ 19440355 (+)
pbdc1 pbdc1,LOC107678025,LOC107687677,LOC107705089 coding upstream 113871 19369830 ~ 19375335 (+)
sfrp1b NA coding upstream 214353 19258631 ~ 19274853 (+)
LOC117599386 NA coding downstream 10100 19530877 ~ 19540276 (+)
LOC113544003 NA coding downstream 19601 19540378 ~ 19549194 (+)
LOC113543930 NA coding downstream 128686 19649463 ~ 19665324 (+)
LOC117595711 NA coding downstream 271927 19792704 ~ 19805795 (+)
LOC113544133 NA coding downstream 276996 19797773 ~ 19800518 (+)
G271923 NA non-coding upstream 4302 19482497 ~ 19484904 (+)
G271884 NA non-coding upstream 153326 19333846 ~ 19335880 (+)
G271853 NA non-coding upstream 259783 19229061 ~ 19229423 (+)
G271576 NA non-coding upstream 476974 19011175 ~ 19012232 (+)
G271571 NA non-coding upstream 525426 18963355 ~ 18963780 (+)
LOC113544143 NA non-coding downstream 296401 19817178 ~ 19825232 (+)
G272246 NA non-coding downstream 445350 19966127 ~ 20008197 (+)
G272249 plpp1 non-coding downstream 702700 20223477 ~ 20226693 (+)
G272305 NA non-coding downstream 719117 20239894 ~ 20240346 (+)
G272347 NA non-coding downstream 788814 20309591 ~ 20309876 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other upstream 74579 19376092 ~ 19414627 (+)
G271863 NA other upstream 245301 19241709 ~ 19243905 (+)
G271406 NA other upstream 1081708 18404269 ~ 18407498 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 2388137 17099096 ~ 17101069 (+)
trnam-cau_42 NA other upstream 2399828 17089307 ~ 17089378 (+)
LOC113543969 NA other downstream 261650 19782427 ~ 19786831 (+)
G272180 NA other downstream 273135 19793912 ~ 19825232 (+)
LOC117599326 NA other downstream 305185 19825962 ~ 19830268 (+)
trnae-cuc_36 NA other downstream 327978 19848755 ~ 19848826 (+)
gfra2b gfra2 other downstream 332777 19853554 ~ 19943505 (+)

Expression


Co-expression Network