LOC113543969


Basic Information

Item Value
gene id LOC113543969
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19782427 ~ 19786831 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU322526
GAGGGTAAAAGCACCTGaattctttactcaagtaaaagtacaacTACTTAATATCTTATTTTAATAAGTGCTCTGGTAAAAGTATGAAAGTATTTTACTTTAAGTACAAGAAagtttcaaaaaagaaaaagactccACTGCTAATTAAACTGATTGTAGTTACTTATGaaaacttactgacactggaCTCTCCTTCCATgccaatgttaaataaacatcatcttACAGAGCAACAACAATAGCAACAATTACACGTGTATTTTAAATCCGTTGGAGTGTCTGCATGTGTCTGGAGTGTCCACGGctgcaactactgtcagagctgctgatatagaaaatgaatcagcacctTTTGACCAGAATGGAGAATTCGCCAGTCAGAGTGTAAGGGGACGTTATCAAGCGCATGTTGTGAAGTCCTGCTTTTCTGGATTTGGCTCAGATTTGTTCTCTGGGTTAATTTTCTGGGACATGTTTTGGACTCTCTGTTTTTAGCCAATCATCTGCTTTAGGTCATTGATTTCAACACATCAGAGCGTCCCACCTTGAAAAATGTCTGTGCTGAAGAGGTCAGTGTTCGTGGGTTTTTTCCTGCTTGCTCTCGTCGCTGTGAGCCATGCAGCCTGCTGGCAATGGAAAATCAAAGAAGGTGCGACTCATTGTCAGGACCGCGTGGATAAGACGTGGCACCCGGTTGGATCCAGCTGGACAAACAGCGAGTGTGCACAGTGCTACTGCAGATCCGATTACGCTTCATGCTGTCATGGaTGGCCAACGTCCGTGTCTGGAGGATGCATCATTGAATATGATTATAAAAcctgtaaatatgaaataattaatCTTGAACATCCAAGTCTTTCATGTGGCGCTGCTGGAAAGTGATTGTGAAGATGAACTGAATTACAGTTTATCATAGAATCAGGAGACCTGAAgcacaaaaaaataacaggTTTAGTGAGACTGGAGATGACCTTGTGGAATAAAATTTGAATACCATCCGAGGCCAGCGAAATGTATAAACTGTTTAAGTATGAAATTGATCAGTGATCAAATCATATGAATTTTAAATCCAATTACTTTCACAATCAGAATCTGTGCATACATTCATTTTGACTAGCACTAAATTCTTCTTCTCACCTTTTGTTCCATGAAGCCATTTGGAAGATGATTTgcaaagacaaataaataaatcacttaatGAACACTCAG
>TU322527
GAGGGTAAAAGCACCTGaattctttactcaagtaaaagtacaacTACTTAATATCTTATTTTAATAAGTGCTCTGGTAAAAGTATGAAAGTATTTTACTTTAAGTACAAGAAagtttcaaaaaagaaaaagactccACTGCTAATTAAACTGATTGTAGTTACTTATGTCCTACTGCAATGTATAACATTCTCTGtccagaaaacttactgacactggaCTCTCCTTCCATgccaatgttaaataaacatcatcttACAGAGCAACAACAATAGCAACAATTACACGTGTATTTTAAATCCGTTGGAGTGTCTGCATGTGTCTGGAGTGTCCACGGctgcaactactgtcagagctgctgatatagaaaatgaatcagcacctTTTGACCAGAATGGAGAATTCGCCAGTCAGAGTGTAAGGGGACGTTATCAAGCGCATGTTGTGAAGTCCTGCTTTTCTGGATTTGGCTCAGATTTGTTCTCTGGGTTAATTTTCTGGGACATGTTTTGGACTCTCTGTTTTTAGGTGCCTTTTCTTGAAGTGTACCTTTGCATTAGAGTGTTTACTGTCAGTGGGTGTGATGATCATAACTCTAACCCACTTTCTTTCCTATTTAAAGCCAATCATCTGCTTTAGGTCATTGATTTCAACACATCAGAGCGTCCCACCTTGAAAAATGTCTGTGCTGAAGAGGTCAGTGTTCGTGGGTTTTTTCCTGCTTGCTCTCGTCGCTGTGAGCCATGCAGCCTGCTGGCAATGGAAAATCAAAGAAGGTGCGACTCATTGTCAGGACCGCGTGGATAAGACGTGGCACCCGGTTGGATCCAGCTGGACAAACAGCGAGTGTGCACAGTGCTACTGCAGATCCGATTACGCTTCATGCTGTCATGGaTGGCCAACGTCCGTGTCTGGAGGATGCATCATTGAATATGATTATAAAAcctgtaaatatgaaataattaatCTTGAACATCCAAGTCTTTCATGTGGCGCTGCTGGAAAGTGATTGTGAAGATGAACTGAATTACAGTTTATCATAGAATCAGGAGACCTGAAgcacaaaaaaataacaggTTTAGTGAGACTGGAGATGACCTTGTGGAATAAAATTTGAATACCATCCGAGGCCAGCGAAATGTATAAACTGTTTAAGTATGAAATTGATCAGTGATCAAATCATATGAATTTTAAATCCAATTACTTTCACAATCAGAATCTGTGCATACATTCATTTTGACTAGCACTAAATTCTTCTTCTCACCTTTTGTTCCATGAAGCCATTTGGAAGATGATTTgcaaagacaaataaataaatcacttaatGAACACTCAG
>XM_026942526.2
AAGTGTACCTTTGCATTAGAGTGTTTACTGTCAGTGGGTGTGATGATCATAACTCTAACCCACTTTCTTTCCTATTTAAAGCCAATCATCTGCTTTAGGTCATTGATTTCAACACATCAGAGCGTCCCACCTTGAAAAATGTCTGTGCTGAAGAGGTCAGTGTTCGTGGGTTTTTTCCTGCTTGCTCTCGTCGCTGTGAGCCATGCAGCCTGCTGGCAATGGAAAATCAAAGAAGGTGCGACTCATTGTCAGGACCGCGTGGATAAGACGTGGCACCCGGTTGGATCCAGCTGGACAAACAGCGAGTGTGCACAGTGCTACTGCAGATCCGATTACGCTTCATGCTGTCATGGaTGGCCAACGTCCGTGTCTGGAGGATGCATCATTGAATATGATTATAAAAcctgtaaatatgaaataattaatCTTGAACATCCAAGTCTTTCATGTGGCGCTGCTGGAAAGTGATTGTGAAGATGAACTGAATTACAGTTTATCATAGAATCAGGAGACCTGAAgcacaaaaaaataacaggTTTAGTGAGACTGGAGATGACCTTGTGGAATAAAATTTGAATACCATCCGAGGCCAGCGAAATGTATAAACTGTTTAAGTATGAAATTGATCAGTGATCAAATCATATGAATTTTAAATCCAATTACTTTCACAATCAGAATCTGTGCATACATTCATTTTGACTAGCACTAAATTCTTCTTCTCACCTTTTGTTCCATGAAGCCATTTGGAAGATGATTTgcaaagacaaataaataaatcacttaatGAACACTCAGCTAACATGTTAA
>XR_003404464.2
TTGTAGTTACTTATGTCCTACTGCAATGTATAACATTCTCTGtccagaaaacttactgacactggaCTCTCCTTCCATgccaatgttaaataaacatcatcttACAGAGCAACAACAATAGCAACAATTACACGTGTATTTTAAATCCGTTGGAGTGTCTGCATGTGTCTGGAGTGTCCACGGctgcaactactgtcagagctgctgatatagaaaatgaatcagcacctTTTGACCAGAATGGAGAATTCGCCAGTCAGAGTGTAAGGGGACGTTATCAAGCGCATGTTGTGAAGTCCTGCTTTTCTGGATTTGGCTCAGATTTGTTCTCTGGGTTAATTTTCTGGGACATGTTTTGGACTCTCTGTTTTTAGCCAATCATCTGCTTTAGGTCATTGATTTCAACACATCAGAGCGTCCCACCTTGAAAAATGTCTGTGCTGAAGAGGTCAGTGTTCGTGGGTTTTTTCCTGCTTGCTCTCGTCGCTGTGAGCCATGCAGCCTGCTGGCAATGGAAAATCAAAGAAGGTGCGACTCATTGTCAGGACCGCGTGGATAAGACGTGGCACCCGGTTGGATCCAGCTGGACAAACAGCGAGTGTGCACAGTGCTACTGCAGATCCGATTACGCTTCATGCTGTCATGGaTGGCCAACGTCCGTGTCTGGAGGATGCATCATTGAATATGATTATAAAAcctgtaaatatgaaataattaatCTTGAACATCCAAGTCTTTCATGTGGCGCTGCTGGAAAGTGATTGTGAAGATGAACTGAATTACAGTTTATCATAGAATCAGGAGACCTGAAgcacaaaaaaataacaggTTTAGTGAGACTGGAGATGACCTTGTGGAATAAAATTTGAATACCATCCGAGGCCAGCGAAATGTATAAACTGTTTAAGTATGAAATTGATCAGTGATCAAATCATATGAATTTTAAATCCAATTACTTTCACAATCAGAATCTGTGCATACATTCATTTTGACTAGCACTAAATTCTTCTTCTCACCTTTTGTTCCATGAAGCCATTTGGAAGATGATTTgcaaagacaaataaataaatcacttaatGAACACTCAGCTAACATGTTAA

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0051180 vitamin transport biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0009611 response to wounding biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0050817 coagulation biological_process
GO:0042060 wound healing biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU322526 False 1209 TUCP 0.39 7 19782427 19786819
TU322527 True 1335 TUCP 0.39 6 19782427 19786819
XM_026942526.2 False 807 mRNA 0.40 4 19783324 19786831
XR_003404464.2 False 1100 misc_RNA 0.41 7 19782580 19786831

Neighbor

gene id symbol gene type direction distance location
LOC113543930 NA coding upstream 117103 19649463 ~ 19665324 (+)
LOC113544003 NA coding upstream 233233 19540378 ~ 19549194 (+)
LOC117599386 NA coding upstream 242151 19530877 ~ 19540276 (+)
LOC117599385 NA coding upstream 293333 19485272 ~ 19489094 (+)
LOC117599384 NA coding upstream 314205 19449805 ~ 19468222 (+)
LOC117595711 NA coding downstream 5873 19792704 ~ 19805795 (+)
LOC113544133 NA coding downstream 10942 19797773 ~ 19800518 (+)
LOC113543999 LOC108277114 coding downstream 231535 20018366 ~ 20023714 (+)
itga1 itga1 coding downstream 263787 20050618 ~ 20110301 (+)
sub1a sub1,sub1a,LOC108276987,LOC107686443,LOC107562553,LOC107571117 coding downstream 330694 20117525 ~ 20123709 (+)
G271923 NA non-coding upstream 297523 19482497 ~ 19484904 (+)
G271884 NA non-coding upstream 446547 19333846 ~ 19335880 (+)
G271853 NA non-coding upstream 553004 19229061 ~ 19229423 (+)
G271576 NA non-coding upstream 770195 19011175 ~ 19012232 (+)
G271571 NA non-coding upstream 818647 18963355 ~ 18963780 (+)
LOC113544143 NA non-coding downstream 30347 19817178 ~ 19825232 (+)
G272246 NA non-coding downstream 179296 19966127 ~ 20008197 (+)
G272249 plpp1 non-coding downstream 436646 20223477 ~ 20226693 (+)
G272305 NA non-coding downstream 453063 20239894 ~ 20240346 (+)
G272347 NA non-coding downstream 522760 20309591 ~ 20309876 (+)
LOC113544004 LOC108276941 other upstream 261650 19489206 ~ 19520777 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other upstream 367800 19376092 ~ 19414627 (+)
G271863 NA other upstream 538522 19241709 ~ 19243905 (+)
G271406 NA other upstream 1374929 18404269 ~ 18407498 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 2681358 17099096 ~ 17101069 (+)
G272180 NA other downstream 7081 19793912 ~ 19825232 (+)
LOC117599326 NA other downstream 39131 19825962 ~ 19830268 (+)
trnae-cuc_36 NA other downstream 61924 19848755 ~ 19848826 (+)
gfra2b gfra2 other downstream 66723 19853554 ~ 19943505 (+)
G272367 LOC108276637 other downstream 611449 20398280 ~ 20398947 (+)

Expression


Co-expression Network