G272347


Basic Information

Item Value
gene id G272347
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20309591 ~ 20309876 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU322720
CCGACATCTCTTTCTGTCACATTCGTGCTAACTATGCTGGATTTTCTTTATTGGATTATTTGTTCTGTTTGACAGGGTTGCCATTCACAGGCCCCATCCAAAACACCAAACATTTCCTATCCAAACACCATACACTGATTTTTATGTCTAACAGCATGGCTGCATTTACAAATTGATATTGATATAAAAAAGGAATACCAtgcaatacatttaaaaaaagCATTGCAGTGCAGCTCACAGTCCTCT

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU322720 True 246 lncRNA 0.37 2 20309591 20309876

Neighbor

gene id symbol gene type direction distance location
mtrex skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870 coding upstream 94837 20182654 ~ 20214754 (+)
pstpip2 pstpip2,LOC107744171,LOC106568404 coding upstream 154788 20125535 ~ 20154803 (+)
sub1a sub1,sub1a,LOC108276987,LOC107686443,LOC107562553,LOC107571117 coding upstream 185882 20117525 ~ 20123709 (+)
itga1 itga1 coding upstream 199290 20050618 ~ 20110301 (+)
LOC113543999 LOC108277114 coding upstream 285877 20018366 ~ 20023714 (+)
sftpba LOC108276523 coding downstream 20610 20330486 ~ 20342383 (+)
mpx LOC100335032 coding downstream 298939 20608815 ~ 20623941 (+)
loxa lox,LOC108277371,LOC107562574 coding downstream 337931 20647807 ~ 20661095 (+)
snx24 snx24 coding downstream 353227 20663103 ~ 20670487 (+)
gmcl1 gmcl1,LOC107688092,LOC106564898 coding downstream 375096 20684972 ~ 20697663 (+)
G272305 NA non-coding upstream 69245 20239894 ~ 20240346 (+)
G272249 plpp1 non-coding upstream 82898 20223477 ~ 20226693 (+)
G272246 NA non-coding upstream 301394 19966127 ~ 20008197 (+)
LOC113544143 NA non-coding upstream 484359 19817178 ~ 19825232 (+)
G271923 NA non-coding upstream 824687 19482497 ~ 19484904 (+)
G272361 NA non-coding downstream 99847 20409723 ~ 20465046 (+)
G272360 NA non-coding downstream 132823 20442699 ~ 20447678 (+)
G272426 NA non-coding downstream 252300 20562176 ~ 20564064 (+)
G272427 NA non-coding downstream 255157 20565033 ~ 20660294 (+)
G272448 NA non-coding downstream 349727 20659603 ~ 20725194 (+)
gfra2b gfra2 other upstream 366086 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 460765 19848755 ~ 19848826 (+)
LOC117599326 NA other upstream 479323 19825962 ~ 19830268 (+)
G272180 NA other upstream 484359 19793912 ~ 19825232 (+)
LOC113543969 NA other upstream 522760 19782427 ~ 19786831 (+)
G272367 LOC108276637 other downstream 88404 20398280 ~ 20398947 (+)
G272374 NA other downstream 113523 20423399 ~ 20429143 (+)
G272408 NA other downstream 230449 20540325 ~ 20542954 (+)
LOC113544125 LOC100304632 other downstream 1049643 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 1166211 21476087 ~ 21478880 (+)

Expression


Co-expression Network