G272361


Basic Information

Item Value
gene id G272361
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20409723 ~ 20465046 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU322742
ccTTCAAGTCCTGTCAGAAATATGATACGAGGAGAGCGGACCTGAACGCCATGACAATGCTGTAATTACAACTCAGGAATTTGCATTTTTCTAAGAGCTTACAGCACATGGTACAATTTAAGAGGTAATTTTGCATGTTAACTGTTcagttcttcattttctttcaggaaagcaaaataaactttaattaataaactaaaattaaatacatttttctcatgctgtccatttttttctgaccGAAaccacctgaacacacaccacatcgtAATCACGACCGCCCAACTCGTACGCTCAAACTTCAGAGGAGGATTTGAAGGCAGCAATAGTTACAACATAGTGCACACGTCctcaaccctggtcctggagaagcACCCGTCCTGCacgttttagtgttttcccGCTCCCAACTCACCCAACCCAACCAATCAGCTgattaacagcccttcctgagttgaagtgggtgtgttagagcagggaaaacactaaaatatgggTTCTCCATGACCAGATTTGGGAACCTGTGACAGTGCATTTCTCATTTCAACGTGGTATAAAAAGTCAAAGATCAAAGTTTGCCACCTAGTGGTCATATGCAGTTTTGCAGTTTTTACAGCATCTGGAGGATGGTGACTGGTTTATTTGGTGCTGGCATTCTGTTGCAggactgaaggaggcgtgtctcTGTTCCTGAGtaagcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtg
>TU322744
ccTTCAAGTCCTGTCAGAAATATGATACGAGGAGAGCGGACCTGAACGCCATGACAATGCTGTAATTACAACTCAGGAATTTGCATTTTTCTAAGAGCTTACAGCACATGGTACAATTTAAGAGGTAATTTTGCATGTTAACTGTTcagttcttcattttctttcaggaaagcaaaataaactttaattaataaactaaaattaaatacatttttctcatgctgtccatttttttctgaccGAAaccacctgaacacacaccacatcgtAATCACGACCGCCCAACTCGTACGCTCAAACTTCAGAGGAGGATTTGAAGGCAGCAATAGTTACAACATAGTGCACACGTCctcaaccctggtcctggagaagcACCCGTCCTGCacgttttagtgttttcccGCTCCCAACTCACCCAACCCAACCAATCAGCTgattaacagcccttcctgagttgaagtgggtgtgttagagcagggaaaacactaaaatatgggTTCTCCATGACCAGATTTGGGAACCTGTGACAGTGCATTTCTCATTTCAACGTGGTATAAAAAGTCAAAGATCAAAGTTTGCCACCTAGTGGTCATATGCAGTTTTGCAGTTTTTACAGCATCTGGAGGATGGTGACTGGTTTATTTGGTGCTGGCATTCTGTTGCAggactgaaggaggcgtgtctcTGTTCCTGAGtaagcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtttgtgtgtgtataccagtGCAAGCGCAGTGCATGCAGGAAGGCGGAGAGTCCCTCCATCAGCAGCAGGATGGAGATGGTGAGGACAGCGAAGACGCTGAAGACAGGAACGAGGAAGAGCACGCCAAGACGCACGCTTATTCTCAGAGCTACATGCATAACCATCGTCCACAGAACCTCAGAGagctctaatacacacacacacacacacacacagaaaccaaaAACAATATATCACACATTTAATAACAGACACCAACAAAAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU322742 False 751 lncRNA 0.44 2 20409723 20465046
TU322744 True 1019 lncRNA 0.45 2 20409723 20456458

Neighbor

gene id symbol gene type direction distance location
sftpba LOC108276523 coding upstream 67340 20330486 ~ 20342383 (+)
hvcn1 hvcn1 coding upstream 96466 20303730 ~ 20313257 (+)
mtrex skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870 coding upstream 194969 20182654 ~ 20214754 (+)
pstpip2 pstpip2,LOC107744171,LOC106568404 coding upstream 254920 20125535 ~ 20154803 (+)
sub1a sub1,sub1a,LOC108276987,LOC107686443,LOC107562553,LOC107571117 coding upstream 286014 20117525 ~ 20123709 (+)
mpx LOC100335032 coding downstream 143769 20608815 ~ 20623941 (+)
loxa lox,LOC108277371,LOC107562574 coding downstream 182761 20647807 ~ 20661095 (+)
snx24 snx24 coding downstream 198057 20663103 ~ 20670487 (+)
gmcl1 gmcl1,LOC107688092,LOC106564898 coding downstream 219926 20684972 ~ 20697663 (+)
pcyox1 pcyox1 coding downstream 237469 20702515 ~ 20711026 (+)
G272347 NA non-coding upstream 99847 20309591 ~ 20309876 (+)
G272305 NA non-coding upstream 169377 20239894 ~ 20240346 (+)
G272249 plpp1 non-coding upstream 183030 20223477 ~ 20226693 (+)
G272246 NA non-coding upstream 401526 19966127 ~ 20008197 (+)
LOC113544143 NA non-coding upstream 584491 19817178 ~ 19825232 (+)
G272426 NA non-coding downstream 97130 20562176 ~ 20564064 (+)
G272427 NA non-coding downstream 99987 20565033 ~ 20660294 (+)
G272448 NA non-coding downstream 194557 20659603 ~ 20725194 (+)
G272450 NA non-coding downstream 251465 20716511 ~ 20737500 (+)
G272470 NA non-coding downstream 284315 20749361 ~ 20749647 (+)
G272367 LOC108276637 other upstream 10776 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 466218 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 560897 19848755 ~ 19848826 (+)
LOC117599326 NA other upstream 579455 19825962 ~ 19830268 (+)
G272180 NA other upstream 584491 19793912 ~ 19825232 (+)
G272408 NA other downstream 75279 20540325 ~ 20542954 (+)
LOC113544125 LOC100304632 other downstream 894473 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 1011041 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 1457505 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 1904210 22369256 ~ 22374875 (+)

Expression


Co-expression Network