G272367 (LOC108276637)


Basic Information

Item Value
gene id G272367
gene name LOC108276637
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20398280 ~ 20398947 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU322750
CTAAAATCTTCATAATCATTGGAGGGCTTCTTGTGTGGAGCTTTTTCTGCAGTGCCAGGACTTATGATGATCGGCTCTGGAGTTTGGCTCTGGAGACTGGGTTGTGGAATAGGGATGGACTGAGTGTTAAGGTTTGGTTTAGGGAGAAGACTCGAGTGTGTAGTTGCGCTTCGACCAGGTTGTACAGGAGGACTAGGGAAAGTTAACGACTTGGGCTTGGCGCTGGGGCTAAGCTGGGCGTGAATTGGACTAAGAGGGGCATTTGGACTGAGCTGAGTATCTTTGGGGCTGAGTTGAGAATTTTGTGAGCTCTGTGGGCTGCGGCGTCCTTGTAGTGGCTCCGCAGGGGATTGAGACGTAGAGCTTGTCGCTGGAATAATGGGTAAAATGGCAGGAGGGTCCACGGTTCTAGGGGACTTTACCCCAGATCTGGCAGTAGGCCTGGGTCGGCTGATGCTAACAGAGCCTAAAGAGGTGGACACTGGGCCTCCACATTCCTGCAGGGATGTATCTGATGTCTTGGCAGTGCTGATCGCTGGAGGGTTTAATGTCTTTGTGGTGGGGCAGACTGAAGCTGGAGGGGGCAGGATGGGAACTGAAGCTGGGCTAAGCCTTGGTGCTCCTGTGGATTGCATCAGGAATGAGCAGCTTTGGCCAGGCTGTGCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU322750 True 668 TUCP 0.53 1 20398280 20398947

Neighbor

gene id symbol gene type direction distance location
sftpba LOC108276523 coding upstream 55897 20330486 ~ 20342383 (+)
hvcn1 hvcn1 coding upstream 85023 20303730 ~ 20313257 (+)
mtrex skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870 coding upstream 183526 20182654 ~ 20214754 (+)
pstpip2 pstpip2,LOC107744171,LOC106568404 coding upstream 243477 20125535 ~ 20154803 (+)
sub1a sub1,sub1a,LOC108276987,LOC107686443,LOC107562553,LOC107571117 coding upstream 274571 20117525 ~ 20123709 (+)
mpx LOC100335032 coding downstream 209868 20608815 ~ 20623941 (+)
loxa lox,LOC108277371,LOC107562574 coding downstream 248860 20647807 ~ 20661095 (+)
snx24 snx24 coding downstream 264156 20663103 ~ 20670487 (+)
gmcl1 gmcl1,LOC107688092,LOC106564898 coding downstream 286025 20684972 ~ 20697663 (+)
pcyox1 pcyox1 coding downstream 303568 20702515 ~ 20711026 (+)
G272347 NA non-coding upstream 88404 20309591 ~ 20309876 (+)
G272305 NA non-coding upstream 157934 20239894 ~ 20240346 (+)
G272249 plpp1 non-coding upstream 171587 20223477 ~ 20226693 (+)
G272246 NA non-coding upstream 390083 19966127 ~ 20008197 (+)
LOC113544143 NA non-coding upstream 573048 19817178 ~ 19825232 (+)
G272361 NA non-coding downstream 10776 20409723 ~ 20465046 (+)
G272360 NA non-coding downstream 43752 20442699 ~ 20447678 (+)
G272426 NA non-coding downstream 163229 20562176 ~ 20564064 (+)
G272427 NA non-coding downstream 166086 20565033 ~ 20660294 (+)
G272448 NA non-coding downstream 260656 20659603 ~ 20725194 (+)
gfra2b gfra2 other upstream 454775 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 549454 19848755 ~ 19848826 (+)
LOC117599326 NA other upstream 568012 19825962 ~ 19830268 (+)
G272180 NA other upstream 573048 19793912 ~ 19825232 (+)
LOC113543969 NA other upstream 611449 19782427 ~ 19786831 (+)
G272374 NA other downstream 24452 20423399 ~ 20429143 (+)
G272408 NA other downstream 141378 20540325 ~ 20542954 (+)
LOC113544125 LOC100304632 other downstream 960572 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 1077140 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 1523604 21922551 ~ 22033997 (+)

Expression


Co-expression Network