G272374


Basic Information

Item Value
gene id G272374
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20423399 ~ 20429143 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU322768
CAAAGGTTGTGGAACTCTTcagttcctgaaaaaaaaaatgcagaactcTTACATTCCCGAAAATGTTTTAGAGCTATTCAGTTAGTGAAAAAGTTCAAGAAATATTCAGTTCTGAAAAGGGTTCTGAAACTCTTCCCTTTTCCTGAAAAATGTTCCAGAACTCTTTAGTTCCTGAAAAACTCCTTCTGATATAGATCTACCTACCTacagcatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcagctgaaGGAGGACATGCTGGATTGAGAAACTCTGCTCTAAGTCACTGAAGAACATTTTCCAGCAACACGTCTGACCTTCCCTAATTCCACACTGTGTTCTTcttctaaaccctaaacccaaGGCCGTCCTTCTCAATCAGTACTTCATTTGcctcataaaacaaaaaaggacaaTCAATAATCTgttaatgaatacatttataaaagggCAAATCAGAGGACAGGCAGATAAAGCAGTAGAGACATGGATCAACAGTGCGCTATTGAAGAAGAAAACTGTTGAGAAGTGGACAATCCACTGACGaacgaaaagaaaaaaaaaaaccctgaaactaATTCTCATGATGTAATAACCAAGTCGACGGCTTTTtctattgctttttttattgataCGCTTTTTATTCATAACCGTGTGACTGAGAATGACGTTTTATTTCTCTACTGCTTTATCTGTAAATCCTCTGACTTGTACAACAAGCAGTTTTGATGCCATGATATGAAGAAGGAGCTtttaacagaagaagaagaagaatattaaTGAGGTATTTAACGCCAAACTAATCACTCACAGCAAATCCACCATACAGTCACGTTCAGCTGAGGAGGCGTAAACACTGAGTCAGAGGCATGAGATGACCGTTGCCAAGCACACGAcgttttcctcttttctctaaCAAAACGTGATTAGACACAAAGCACTGATTTTCCATGGATCTTCTCGCAAATGTATCCATTCGAGGCTTTATCTCTGGCCGTGTACATGACGTACTGAAGCTGTAGGGCTGTGTGATATGACGATATATTCATCATTATTGTGATAAATGATGACATCTGAGAGCCTCCTGAGTTTCTTCAGTACAACATCGTCCAAATCTGTTTGTACTAAGAGCaacctattttaaaaataatttattttcgtTTATCAGTTTTTATCATTagaaaaagtcttcaggaatCATGATACGATATTGCTACCATATCACGGCCCCTCACTCTGCACCCTGTACATGGAGACTTTGTTTCCTAAGTGACATTTTTGTTTCGCCAAATCAACATCTTCGCAATGTTACTGAATGCTGATGGTTCACTACAATACAAGCGTTAcaagcacaattttttttttttgcgaaatATGTTAtccatcatgtgtgtgtgaacaaagcGTGATACATTCCAGCAGAATTAGACCTCTGTTCCTGAGAGCTTCATCTAGCTTTATCAgcgtgaaaaataaaaagatttaaatccTTTACAGTTGCATTAATGCAGCCTGAAGAGTTCAGTAGATAATTAGTGCAGATAAAAGATATAATAGATAATTAATTAGTagatcatttaaaattttttgtttgaaattgaGCCTGATgtaagcagcagcagcatcggaaaaaaatgatcaattatTATGTATTTCTTTCGCTCTGAAAGATACTGCTGTTCTAACTGCACTGATACTGCTGACTGTTctgtatattaatttttattatgctAGAAACTTTAACTGATTTCccatcattatttattatttattttatgtgaaaCCCCAATAGATATCTTTAATCCTTATTGTTTCAgatggatatacagtatattgcagtTTGGCCAACATTCCTTTGTTTAGATATAAAAACGTGTTCGCAGTAGATTGGCATTATTGTATGCGTGTCCTTACACATGCTCATGGTTATGATATGGAATACTTGTCCAGTGGCTCTACTTTTAAAATCCATAATTAccaaaaatgtccaaaaaaacaaacagactcCATTTTGGGATGAAACTCTTCGTAGGTTATAACAAATGATTGGCACATGACTAATTCAGCGTGACTTTAACGATATAATTTTCAAGTTCTCCGAGTTGACTGCGCTCTCAGGTCCTTATTGTAACACGACCTTGGGATCGCTGTCAGCTCTGTTACCAAACTGAGTAAACACTAAGGTAAGACTACCTACTGACTCCTGAAAACGACGCTGATATAAATCCACTTCAAGCTAAAATGGTCCTTGTAATGACCAGTGCAATTTACattgaataaaatgcaaaaataaataagaatgacTTCCACTCTCCGTCCAGCAGATGACGACATACACgcagctgtgagtgtgtgaccgTACCACTGCACACTGCTTCCAAATATGACCTCTACTGGTGTTGCTGTCTGAGTAAGAAATACAGCAGGAAAAATCCCAACACCATGAGTAATACTGAGAACAAACATCAAGGAAAACGTCACATAGACAAAAAGCACCCACACAAAACCTTTTGAGGGACAAACACAAAGCCATTTCTGTTTCGGTGTTCATTCCGGCTGTGCTAAAGACATCCGAATATCCTTAGAGACACAGGccaagtctaataataaaaccCCGTAATGAGGATTATATAACATGTTCCAGCTGTTCTTTAGTGAGTAAAGACATTGGCCATTGTTTCTATAGTTTTGCCCTTAAGCTGTGAGGCTaatataatggaagtctatgtCACTCCAAATATTTTTTCTGCACACTTCTGCCTCAAACCACTTCCAGCTCTTCGGTGATGTCACACAGACCTGCTGGTGTGGTTTAGGAGACTGTAGGACTTTCTGTCatctataaacacaaacaaaacttcATAGCATCACAGAATGATTGAATGTTATGGAGGCAGCCATTTTGGACAATCACTTTGGAGGCGGGGTTGTATGTAACACTACAAGCACCCGATGAGGACACGCCCCTCTAAGCCCCGCTTTACAACAACTGCAAGCAGAATTGTAAACGAAAGCTGGAATTTATGACGTAATAATATGGTGACACTTTAAACTTGAATTTGTAAATATGCACTCTGCCTGCTATTTGAGCCTAAACAacattgctgttgaattctcaaatctgattggtcagggtgtgttgattaattttcgatttctcaaatcacaggttaatgttaatgcactttttctaataccttatcatttctatagtaaccgctcaatcacagggacttgtatagcagataaattgaagctttctgtaaggagatgtttatttaacatttatggaaggagtctccagtgtcagttttgtaacagtaagttttctgccacaggaaagtgttcaggacagaggagtttacgcttttctgtctctctgtaatGTGACAACCTGTGGTTTTCTTTGTCTTATCaacttcgagagagaaaaaagagaggctagtgagaaAACAACTATTTTATAccattataatgtataatataataacataataatgttatattttcacATGCTAACAAGAACTAACGTCCCACGAAAGTTACagaaatgtatctataaacggataaaaaatatatgatgttttgttctttagtaaattaataattgtaatcactgacaaagtgctatggtataaaaagaataaaacacttcaggacatgctgttattgaaaaattaGCAACTTCCTACTTTACAATATCTTTTGAAGTGAGTGTAAGACAATTTGGCAATGTGTTTATGATAAAAGGATTTTGGGTGAAACAGACTTCCACTATTTTCTAACATTTCCCTCATAGCTTCAGAAGCAATCTGCATACACTAATCGTATGTTTGCAGTAAGGGGAacacttttaaatatttgtcaGACTGTTTGTTTAATCCCAAGCCTGTGAGTAAACCTGCTCATGGCTGTTTTctttaaacagtttaatttaTCTAGGTAGaaatgtcaggttttttttttttgtttgttttgtttttttacggATACACCCACCAACTTCAGGCCTGTCAGTTTTCCTAAATGTCCATCCTTACTGTAAACTAAACAGAAATGGAGATGATCTCACCAGTGTGCAGTTTATGTAAACGTAagcttgagaaaaaaaatctgtaacaaacaCCTGACATACAAGAGCTGCCTTTACAAGCCCCTTCCAGACTAGCAGAACGAGAAGAACAGTACCTCAAACCACCAAAGCGGtcatttcttcatttgtaaccactgagtttttttaaaacaaaaaaaaagtgcttgagCAGTTCATAGGCGACCTGCTGAATGCCGGTGTTACCCAGAATCCCGCAGACACCTGCGTTGTGGCTTCACAGTGGAGATAAAGATCAGTCACTCATGCAGGAGTGTTTATGCCAACCGGTGTGTATTTAACCAAAATGGAGGTAATATGCAAAGTTAGAGTCTCAGAGCTTTGTGAGCTTGGAGATAACTGAAACCTATTGGCACAGTAAGGAGGTACCGGTACTGTGGCTCAAAACACATTTAGCACTTTTCCACCAACCTGGTACTGGTGCTGATGGAACCGTTCTGTGCTTTACACAAGTTCCTAGCTGGCCAAATAGAACATTAAGTAGCATGCATATGGTCACACTGTCGCCATGAGAACAACATAAGCAACTCATGACCCACAATGGTTATTTCTATGTTATGTTTTCGTAAAAGGAGTCAAAACCTGGCTATGGTTCCCTAAAAGAGGTTCCCTGAACAGACACTTGCACCATGTTGGTGGAAAAGGACTAACTATGTGTCACAAGAGCTCACAAGAAAAACCAGTTAAACCTCCAGATAGGATTCATTGGAACTTCATGTGAGGAAGGACCATAACTTACGATTTCCagtttgtctttctgtcctcAGTCCATCTTTTCATGGAACCCTATCTCTGTCCTCCTGTCAGATTTTAGAGCTAGTTGTGGAAACAGTTCTAGGTCTGCTGATGGTTCTACGTCAATGTAGCCTTCAATAGAGGATTCTTGAGGTGACTCAGTGTCAACATACAGTTCTAATGAATGTCCTAAGTCATGGACAAGGTCATTGACATGGTCTAGTGCTGGAGGTGGTTCTAGATCATGGTCTAGTGGTGAAGATGGGTCTAGATCATGGTCTAGTGGTAAAGATGGGTCTAGATCATGGTCTAGTGGTGAAGATGGGTCTAGATCATGGTCTAGTAGTAAAGATGGTTCTAAGTCATGAACTACTTCTGATGGTTCTAGATCATGGTCTAGTTCTGAAGATGGTTCTAGGTCCTGGACTAGTTCTGAGGATGGTTCTAGGTCATGAACTAGTTCTGAGGTTGTTTCTAGGTCAGGGACTAGTTCTGAGTATGGTTCTAGGTCCTGGACTAGTTCTGAGGATATGTCTAGGTCATGGACTACTTCTGTGGATGGGTCTAGACCATGTACTTGTTGTGAGGCTAGTTCTAGCTCAAGGTCTAGTTCTGAAGATGGTTGTAGGTCATGGTGTAGTTCTGAGAATGAATCTAGCTTATGGTCTAGTTCTGAAGATGGTTTTAGCTCATGGTCTACTTCTGAAGATGGTTCTAGGCCTTTATCTAGTTCTAAGGATGGTTCTAGGTCTTGAACTAGTTCTGAGGATGGTTCTAGGTCATGATCTAATGCTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU322768 True 5655 TUCP 0.38 2 20423399 20429143

Neighbor

gene id symbol gene type direction distance location
sftpba LOC108276523 coding upstream 81016 20330486 ~ 20342383 (+)
hvcn1 hvcn1 coding upstream 110142 20303730 ~ 20313257 (+)
mtrex skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870 coding upstream 208645 20182654 ~ 20214754 (+)
pstpip2 pstpip2,LOC107744171,LOC106568404 coding upstream 268596 20125535 ~ 20154803 (+)
sub1a sub1,sub1a,LOC108276987,LOC107686443,LOC107562553,LOC107571117 coding upstream 299690 20117525 ~ 20123709 (+)
mpx LOC100335032 coding downstream 179672 20608815 ~ 20623941 (+)
loxa lox,LOC108277371,LOC107562574 coding downstream 218664 20647807 ~ 20661095 (+)
snx24 snx24 coding downstream 233960 20663103 ~ 20670487 (+)
gmcl1 gmcl1,LOC107688092,LOC106564898 coding downstream 255829 20684972 ~ 20697663 (+)
pcyox1 pcyox1 coding downstream 273372 20702515 ~ 20711026 (+)
G272347 NA non-coding upstream 113523 20309591 ~ 20309876 (+)
G272305 NA non-coding upstream 183053 20239894 ~ 20240346 (+)
G272249 plpp1 non-coding upstream 196706 20223477 ~ 20226693 (+)
G272246 NA non-coding upstream 415202 19966127 ~ 20008197 (+)
LOC113544143 NA non-coding upstream 598167 19817178 ~ 19825232 (+)
G272360 NA non-coding downstream 13556 20442699 ~ 20447678 (+)
G272426 NA non-coding downstream 133033 20562176 ~ 20564064 (+)
G272427 NA non-coding downstream 135890 20565033 ~ 20660294 (+)
G272448 NA non-coding downstream 230460 20659603 ~ 20725194 (+)
G272450 NA non-coding downstream 287368 20716511 ~ 20737500 (+)
G272367 LOC108276637 other upstream 24452 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 479894 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 574573 19848755 ~ 19848826 (+)
LOC117599326 NA other upstream 593131 19825962 ~ 19830268 (+)
G272180 NA other upstream 598167 19793912 ~ 19825232 (+)
G272408 NA other downstream 111182 20540325 ~ 20542954 (+)
LOC113544125 LOC100304632 other downstream 930376 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 1046944 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 1493408 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 1940113 22369256 ~ 22374875 (+)

Expression


Co-expression Network