G272408


Basic Information

Item Value
gene id G272408
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20540325 ~ 20542954 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU322810
tgttagtgaaggaggcgtggcctatgtacctgtcagtgttagtgaaggaggcgtggcctatgtacctgtcagtgttagtgaaggaggtgtggcctatgtacctgtcagtgttagtgaaggaggcgtggcctctgtacctgtcagtgttagtgaaggaggtgtggcctctgtacctgtcagtgttagtgaaggaggcgtggcctctgtacctgtcagtgttagtgaaggaggtgtggcctctgtgcctgtcagtgttagtgaaggaggtgtggcctctgtgcctttCAGTCCCAGTGAGGGAGGAGACGTGATTATGCATGTTGAATATGGTggaacagcagaaaaaaacctttacatttacatctttttttttgtttgtttgtttttttgtcttgagGGTCAGGATAATATCCAGATAGGGACCTTATATatgaacataaaaa

Function

NR:

description
PREDICTED: tRNA:m(4)X modification enzyme TRM13 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU322810 True 443 TUCP 0.47 2 20540325 20542954

Neighbor

gene id symbol gene type direction distance location
sftpba LOC108276523 coding upstream 197942 20330486 ~ 20342383 (+)
hvcn1 hvcn1 coding upstream 227068 20303730 ~ 20313257 (+)
mtrex skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870 coding upstream 325571 20182654 ~ 20214754 (+)
pstpip2 pstpip2,LOC107744171,LOC106568404 coding upstream 385522 20125535 ~ 20154803 (+)
sub1a sub1,sub1a,LOC108276987,LOC107686443,LOC107562553,LOC107571117 coding upstream 416616 20117525 ~ 20123709 (+)
mpx LOC100335032 coding downstream 65861 20608815 ~ 20623941 (+)
loxa lox,LOC108277371,LOC107562574 coding downstream 104853 20647807 ~ 20661095 (+)
snx24 snx24 coding downstream 120149 20663103 ~ 20670487 (+)
gmcl1 gmcl1,LOC107688092,LOC106564898 coding downstream 142018 20684972 ~ 20697663 (+)
pcyox1 pcyox1 coding downstream 159561 20702515 ~ 20711026 (+)
G272361 NA non-coding upstream 75279 20409723 ~ 20465046 (+)
G272360 NA non-coding upstream 92647 20442699 ~ 20447678 (+)
G272347 NA non-coding upstream 230449 20309591 ~ 20309876 (+)
G272305 NA non-coding upstream 299979 20239894 ~ 20240346 (+)
G272249 plpp1 non-coding upstream 313632 20223477 ~ 20226693 (+)
G272426 NA non-coding downstream 19222 20562176 ~ 20564064 (+)
G272427 NA non-coding downstream 22079 20565033 ~ 20660294 (+)
G272448 NA non-coding downstream 116649 20659603 ~ 20725194 (+)
G272450 NA non-coding downstream 173557 20716511 ~ 20737500 (+)
G272470 NA non-coding downstream 206407 20749361 ~ 20749647 (+)
G272374 NA other upstream 111182 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 141378 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 596820 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 691499 19848755 ~ 19848826 (+)
LOC117599326 NA other upstream 710057 19825962 ~ 19830268 (+)
LOC113544125 LOC100304632 other downstream 816565 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 933133 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 1379597 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 1826302 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 2079474 22622428 ~ 22665570 (+)

Expression


Co-expression Network