G272426


Basic Information

Item Value
gene id G272426
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20562176 ~ 20564064 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU322832
ctttatttcaatattttacaaGTTGgaaaacatatttacaaaacTAGTTTTGCGTTTGttacactgaacacacacacacacacacacacacacacacacatatgcagagTACTCATTTAAACAGTGTCTGTTTACATGAAACACAAAGACATTacttcacacactttcatcACAAGGACACAGGGGGTTTTATaggagacaaagaaagagagatggagagaaagaatagAAATAAGAAGGGAAGAAATAAAGACATGGAGAGCAAGCAAAAGATTAAAATTAAGATttgagggagaaagaaagagagaaacagaagattAGTGATGGGGAGACAAAACAAATAGAGAAAGCaagggaaagagggagaacAAATGAAAGAATGGGGGGAGAGAAATTAGAGAGAAACAGATGTTcggagagtgaaaaaaaaagacaaagacagagggGAGAAATTAAGAAAGAGATGAGGGGAATCGATAggggaaggagagaaagagaaagatagagagatgaCTAAGAGACAGCCATGATATAAACAGAAAGATAGGAGAAAAGATGGAGAATGAAAGATatggagagactgagagagatatacagagagggtggaaataaaaatgtgaaaagtagGACAGAGACACCGTAAAAACGGAAAATTTATCAAGACACACGCAAGGAGGACTGAGCTTAGCCAAGAGCTTATGCTTATTAAGGCGAGAAtggtgtgacacacacacacacacacacacacacaaatgatcaGACTTGATAGGATCCATTTTGAAAGTCAAAAAGTCCACCTCTTCATAATtaacaattattaaaataattattaacataacTCAGTGACAGGGCAGCagatgaatttgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgtgtgtgtgagacttaaaggaaaaaaatgggtGTATGCAAAAACTTTACACACCAGTGAATCATGCAGCATCACACCACAATCGGAAGCAGCAGCTACACATGAgcagtttttgattttcttgACAAAACTCTTATGattatgcacaaacacacacacacacacacacagtctgcacaactacacaacattacacactgttatatataattgtgtatataGACACGTGCTGATATTCTGTTTTTTCCCATATTGCAATAATATCAAAACTCGGAgaatatatcatgatattcattcatcttcagtaagcgctttatcgaggtcagggtcacggtgctAACCTCATCATCATATTGTactttagaggaaaaaaaagacagttctGTATTTTCATGAACACTAAAGAGAATTACAGAATTGCCAAAAAAGGACATGTCCTTGTCAAAATAAggaaagataaaagataaacatCCTAAATGGACACTAATTCAGTCTACTTACACAGCCTCCTGTTGAAGTGTTGGAAAAGTACTGAAGGATAGGAagaggaaaagacagagagagagagagagagagagagaaagagaaagagatacaggacagacagaaagagagagacagactgataaagcaagagagacagaagaggagagagaaagacagagacaaacacacaagagaaagacagacagacgaaaggagaaagagacagacaagaggagagagagagaaacagacaggcaTAGAaacacagaatgagagagacagaaaaaaatactgaaggagagacagaaagacagacagatatagagagacaggcagaaataaaaagagacacagaaagagagagagagagacagacagagaaatacagagaaagagagaggcaaaaCATCCacaggagagacagacaaagacagaaagcaagagagagagagagagagagagagacagacagacagacatagaaatacagaatgagagagacagaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU322832 True 1889 lncRNA 0.38 1 20562176 20564064

Neighbor

gene id symbol gene type direction distance location
sftpba LOC108276523 coding upstream 219793 20330486 ~ 20342383 (+)
hvcn1 hvcn1 coding upstream 248919 20303730 ~ 20313257 (+)
mtrex skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870 coding upstream 347422 20182654 ~ 20214754 (+)
pstpip2 pstpip2,LOC107744171,LOC106568404 coding upstream 407373 20125535 ~ 20154803 (+)
sub1a sub1,sub1a,LOC108276987,LOC107686443,LOC107562553,LOC107571117 coding upstream 438467 20117525 ~ 20123709 (+)
mpx LOC100335032 coding downstream 44751 20608815 ~ 20623941 (+)
loxa lox,LOC108277371,LOC107562574 coding downstream 83743 20647807 ~ 20661095 (+)
snx24 snx24 coding downstream 99039 20663103 ~ 20670487 (+)
gmcl1 gmcl1,LOC107688092,LOC106564898 coding downstream 120908 20684972 ~ 20697663 (+)
pcyox1 pcyox1 coding downstream 138451 20702515 ~ 20711026 (+)
G272361 NA non-coding upstream 97130 20409723 ~ 20465046 (+)
G272360 NA non-coding upstream 114498 20442699 ~ 20447678 (+)
G272347 NA non-coding upstream 252300 20309591 ~ 20309876 (+)
G272305 NA non-coding upstream 321830 20239894 ~ 20240346 (+)
G272249 plpp1 non-coding upstream 335483 20223477 ~ 20226693 (+)
G272427 NA non-coding downstream 969 20565033 ~ 20660294 (+)
G272448 NA non-coding downstream 95539 20659603 ~ 20725194 (+)
G272450 NA non-coding downstream 152447 20716511 ~ 20737500 (+)
G272470 NA non-coding downstream 185297 20749361 ~ 20749647 (+)
G272770 NA non-coding downstream 363558 20927622 ~ 20931583 (+)
G272408 NA other upstream 19222 20540325 ~ 20542954 (+)
G272374 NA other upstream 133033 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 163229 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 618671 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 713350 19848755 ~ 19848826 (+)
LOC113544125 LOC100304632 other downstream 795455 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 912023 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 1358487 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 1805192 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 2058364 22622428 ~ 22665570 (+)

Expression


Co-expression Network