G272427


Basic Information

Item Value
gene id G272427
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20565033 ~ 20660294 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU322835
GGCATGTGCCGATTATCAGTTAAACACTATATCATAATATTCAACATACAATATCGTCATCTTGGGCAATATTTTGTCAGTATCAGTGACGTGACTTTAGTGATGTGACATTTCTTGTATCATAATTCGCAAGTTTCACTTCTTGTGATGTATTTGTACGTCATCAAACGACAcagtcatttctttttttttttttttttgaggtcttatttattcagaaaaataaagtCCATCTTtacacatgtaatttttttttaatacaatatcgCAGTAATATTGCAAACCGTGATAAAAGAACAGGCAGTCATCATGATTTAATGTCGGCACATGCCTAATGTTCACATTCACATATTGGATAGAATTGCAGTGAAAATGAACGTGCCGTATTTTCCGGACTATAGGTTGctccagagaaaaaaatatatatacacgtcATGTCATTGTACAAGTCGgagagtttttgtttttcgtaaCTTCCTGTAAGACCATCCGTTCTGAGAAGTCACTACACTGcagcatttaatcatttaatgcGAAAACCTCATTGTTCACTTTGTAAGGATGTTTAGTTTGCCTGATCATTGCTGCTACAATAAAGCACATTTTCGGCCATTTTCTACATCGGAAAACGCTTAACGTAAAAAAAGCTTAATGTACAAAAACAATGACAAGtcgttatataaatatatattatatttatatttgaaacTGCTGCCCATGCTGCagcacagggcagtgtaacacactcgttACCCTCCCTCTTCCGcacacgagctcacagacgcctATGACtggttagtgtcactgtgattgacaggggagagagtgtatgcccctcccacccagagagcacagccaattttgctctcttggactcctggctaTGGATTGCTCCGGCATCGTCAGGACTTCGACATCGCCACTCAATAGCTTAACATAAAAattgtgtgtgcgcgtgtttttttttattattactgttttgtCCTTTGagcagtggatagtgtttatgacaaggtgtgtgtgtgtgtgtgtatgtgtgtgagatttggTGTCATTCAGTCATTTTGATATATtaagccagtttttttttttttgtagttattacgttatgttttttccccttgacATTATCTTTACAACTCACTTACGGTATAAATGCTAACAAACTGacaatgagaaaatgagaaaaagcaaCGTATAGTCCGGACATTACggtaaaatcacacacacaagggtCATACGTTACTATACTGCATATTGCTTTGTATTTCTTAAtccaaatatacaaaataagaCCAAAAGATTTAacaataatcaaaaataataaaataacagcaaGGGGGCGCATGTCTTTGGTTCATCAGAACTCTTGTAGCTTATTAACAGCTGAAGAAAtgactaaatgaataaatgaaccaAATTGAGTATTGTCttggttttttttgccttttgtcCTCTGCGGTTGAACATTAAGGACATGAAGGACATGAAGTACATCCGCTCCCCGGCACTCATTACACAGACATATTAAATACATgatctcacatgcacacacatcatttACAAAGGAAAAGCAGCAGGTAAGAAAGTCCActagaacttaaaaaaaaaaaaaaaaaaataaaaaaaaaaaaaaaaaagaaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU322835 True 1647 lncRNA 0.36 2 20565033 20660294

Neighbor

gene id symbol gene type direction distance location
sftpba LOC108276523 coding upstream 222650 20330486 ~ 20342383 (+)
hvcn1 hvcn1 coding upstream 251776 20303730 ~ 20313257 (+)
mtrex skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870 coding upstream 350279 20182654 ~ 20214754 (+)
pstpip2 pstpip2,LOC107744171,LOC106568404 coding upstream 410230 20125535 ~ 20154803 (+)
sub1a sub1,sub1a,LOC108276987,LOC107686443,LOC107562553,LOC107571117 coding upstream 441324 20117525 ~ 20123709 (+)
snx24 snx24 coding downstream 2809 20663103 ~ 20670487 (+)
gmcl1 gmcl1,LOC107688092,LOC106564898 coding downstream 24678 20684972 ~ 20697663 (+)
pcyox1 pcyox1 coding downstream 42221 20702515 ~ 20711026 (+)
stard7 stard7,LOC107713384,LOC107687872 coding downstream 89879 20750173 ~ 20761668 (+)
smarcad1b LOC108277297 coding downstream 184031 20844325 ~ 20864250 (+)
G272426 NA non-coding upstream 969 20562176 ~ 20564064 (+)
G272361 NA non-coding upstream 99987 20409723 ~ 20465046 (+)
G272360 NA non-coding upstream 117355 20442699 ~ 20447678 (+)
G272347 NA non-coding upstream 255157 20309591 ~ 20309876 (+)
G272305 NA non-coding upstream 324687 20239894 ~ 20240346 (+)
G272450 NA non-coding downstream 56217 20716511 ~ 20737500 (+)
G272470 NA non-coding downstream 89067 20749361 ~ 20749647 (+)
G272770 NA non-coding downstream 267328 20927622 ~ 20931583 (+)
G272803 NA non-coding downstream 330049 20990343 ~ 20990551 (+)
G272940 NA non-coding downstream 819606 21479900 ~ 21492672 (+)
G272408 NA other upstream 22079 20540325 ~ 20542954 (+)
G272374 NA other upstream 135890 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 166086 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 621528 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 716207 19848755 ~ 19848826 (+)
LOC113544125 LOC100304632 other downstream 699225 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 815793 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 1262257 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 1708962 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 1962134 22622428 ~ 22665570 (+)

Expression


Co-expression Network